UFO05610.5prime Sequence
1031 bp (893 high quality bases) assembled on 2009-07-15
> UFO05610.5prime
CAGTCGACATGCTGCCATTGTCGATGGCCAGTGCGGAGGCCAAGCAGCTC
CAGCGCAATATATCATTGTCCATGTCGCCAGCGAATGGAGGAGTCATCTC
ACCATCTACCGCGAATTGCAATGGTGTTGCCTCTGCCTCCGGCGGAAATC
CAAATCCCAACAGCCTCCTCACACTAGCTCCGCGCAAGGAGGAGCTACGC
TTCCTGCCCCTGGCGCCCATGGGCGGCAACAAGACCTGCAACATCACCAT
CAGCAATGTCCAGCCAATGAAATCCAAACTAAAGTCGGTCAACATAGTGC
CAAATTCCATAAAGTCCGCTGGAGCTGGCGCCACTGTCGGATCAGCAGAT
GCTCCCCTGTTCCAGCTGGTGCCATCGCCCAGTAATCCCAGCCAACCGTT
GGTGGCCATTCTGGCCCCCAATCGCAAGACCACGCTGCTTGGCGGAGGTG
CATCCAATGGCCAACCGGTGGTCATACGCTCCGGAACACCTTTGCACAAG
AACAGCCTGACCGTTGAGACCAGCAACAAGCCCATCCAGCCAGGAGGATC
GGCTGCAGCAGCCGCCGTTGGAGGCGGAACTGGAGGAGCACCTTTAACGC
TCGTGGGCAAAACGGTCGTTCCACCGAAAATACAAGCGGCGACACCTGTC
CAGATTCCCAGCACGGGTCCGGGTGCGCAGGTATCCCTGCTGACCAATCC
CCTCAAGCCACGTGCTCCACTCATACTCAGCAAGGTGGCGGTGGATAAGC
TGCGTCTAAAGTTCAGCCAGGTCAAGAGCAACCCAAATGCACTCGTTCTC
GGCAAGGCCAATCATGTGAAGAAACTTCTGACATCGCCGACCCCAGTGGA
GAGGATAGACCAGGAGCACCCAGAAGAACAACAAAAAGATACTAGTGCCA
GCTACTGAGCCAGTTGTGGCACCCAAAACGGTTATGCCCATTGCCACGGA
GGTGGCGACCGCCGATAACACAAAATGATCCTATATCCAGCCGTGCCATC
AGGCAGGGCCGCTGCCCAGCAGGACGCCATT
UFO05610.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)mbt-RB | 5398 | CG5954-RB | 788..1813 | 9..1020 | 4680 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27271143..27271773 | 639..9 | 3155 | 100 | Minus |
| 3R | 32079331 | 3R | 27270024..27270374 | 983..639 | 1350 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:23 has no hits.
UFO05610.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:50 Download gff for
UFO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbt-RA | 566..1615 | 1..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:33 Download gff for
UFO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbt-RB | 779..1828 | 1..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:46 Download gff for
UFO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbt-RB | 779..1828 | 1..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:46 Download gff for
UFO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27269964..27270373 | 640..1031 | 93 | <- | Minus |
| 3R | 27271143..27271779 | 1..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:33 Download gff for
UFO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23095686..23096095 | 640..1031 | 93 | <- | Minus |
| arm_3R | 23096865..23097501 | 1..639 | 99 | | Minus |
