UFO05611.5prime Sequence
1059 bp (953 high quality bases) assembled on 2009-07-15
> UFO05611.5prime
CAGTCGACATGATGCTAACAACTGAACACATAATGCATGGGCATCCCCAC
TCGTCAGTCGGGCAGAGTACTCTATTTGGGTGCTCCACGGCGGGCCATAG
CGGAATAAATCAGCTGGGCGGCGTATATGTTAATGGCCGGCCACTGCCCG
ATTCAACGCGTCAAAAAATTGTCGAATTGGCTCATTCCGGCGCACGTCCT
TGTGATATTTCAAGAATACTACAAGTGTCCAACGGTTGCGTAAGCAAAAT
TTTGGGCAGATATTATGAAACTGGATCGATAAAACCTCGAGCTATAGGTG
GTTCAAAGCCACGAGTAGCTACAACCCCGGTTGTGCAAAAAATTGCAGAT
TACAAACGGGAATGTCCCAGCATATTTGCGTGGGAAATACGAGATCGACT
GCTATCGGAACAAGTTTGCAATAGTGATAACATTCCAAGTGTTTCATCTA
TTAATCGAGTCTTACGTAACCTGGCCTCACAAAAGGAGCAGCAAGCTCAG
CAACAAAACGAATCCGTTTATGAAAAGCTTCGCATGTTTAATGGCCAAAC
GGGCGGATGGGCATGGTATCCAAGCAATACAACGACGGCACATTTGACGC
TACCACCAGCAGCTTCCGTTGTGACATCTCCTGCAAATTTATCAGGACAG
GCCGATCGGGATGATGTTCAAAAAAGAGAATTACAATTTTCAGTAGAAGT
TTCGCATACAAACTCTCACGATAGTACATCGGATGGAAACTCTGAACATA
ATTCATCCGGGGACGAAGACTCTCAAATGCGGTTGCGCCTAAAAAGGAAG
TTACAGCGCAATCGGACATCATTTTCTAATGAGCAAATTGACAGTCTTGA
AAAGAATTTGAAAGACACATTATCCCGATGTTTTGCGCGAGAAAGCTTGC
TGATAAAATGGTTTGCCAGAGCACGTATTCAGTTTGTTTTCAAACGACGA
GCTAATGGCGCCGAGAGAAAATGCGACTCAGAGACGATCGTCGAACGTGA
CGGCAGTGGTCGAACCAGCACGCAATATCGTCAGACACTGCATCTTTCTT
CGTGCAACG
UFO05611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toy-RA | 2287 | CG11186-RA | 528..1559 | 9..1022 | 4705 | 98.2 | Plus |
| toy-RC | 3870 | CG11186-RC | 528..1547 | 9..1022 | 4595 | 97.5 | Plus |
| ey-RA | 3282 | CG1464-RA | 622..1024 | 92..494 | 505 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 990252..990502 | 9..259 | 1255 | 100 | Plus |
| 4 | 1348131 | 4 | 996512..996749 | 441..678 | 1190 | 100 | Plus |
| 4 | 1348131 | 4 | 992064..992248 | 258..442 | 925 | 100 | Plus |
| 4 | 1348131 | 4 | 997705..997881 | 677..853 | 885 | 100 | Plus |
| 4 | 1348131 | 4 | 710925..711074 | 102..251 | 285 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:00:12 has no hits.
UFO05611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:51 Download gff for
UFO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 525..1566 | 9..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:50 Download gff for
UFO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 528..1569 | 9..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:39 Download gff for
UFO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 528..1569 | 9..1032 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:39 Download gff for
UFO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 990252..990502 | 9..259 | 100 | -> | Plus |
| 4 | 992066..992246 | 260..440 | 100 | -> | Plus |
| 4 | 996512..996749 | 441..678 | 100 | -> | Plus |
| 4 | 997707..997883 | 679..854 | 99 | -> | Plus |
| 4 | 998623..998705 | 855..932 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:50 Download gff for
UFO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1010878..1011128 | 9..259 | 100 | -> | Plus |
| arm_4 | 1012692..1012872 | 260..440 | 100 | -> | Plus |
| arm_4 | 1017138..1017375 | 441..678 | 100 | -> | Plus |
| arm_4 | 1018333..1018509 | 679..854 | 99 | -> | Plus |
| arm_4 | 1019249..1019331 | 855..932 | 93 | -> | Plus |
