UFO05614.5prime Sequence
1032 bp (902 high quality bases) assembled on 2009-07-15
> UFO05614.5prime
CAGTCGACATGGAAAAATATCCACTTGTCAAAGAATTTATGGGGCAAAAT
TGGCCAAAAGATACCAAAATGGCGCAGCTCGAGAAGGAACTCAAGAAAAG
GAAAGAATTGATCGTCGAGGAGCAGATTGTAGGGCCGCGTTTGGAGCAGG
TGCTATTCGACCTGACCTTGGTCAAGCAGTGCGCCTTGGTAGTGGAGGAT
AACGGTGCCGGTATGGCACAGGCCAACACCATGATACAGGACTGTATGTT
CCAGATCACGCGAATTGAGGAGCTGCTCGAAATGGCCGGGCTGCAGGACA
TCCTCTACTACACGGTGCATCGCAAGGAGCAGGAGTTCCAGCGCAAAATT
AAGCTGCAGGAGGATTTGGCCGAGCAAGAGAATCAGCAGAACACAATCCT
CGAATCGCGCAGCATCGTCCAGGAATTCCGAAAAGAGCAAGCCTTAAAAA
AAGAGGCAGATAAGGAGCTAGCCTCAGTGGACGACCAACTGGACCAGTCG
GATCGCGAGTGGACAATTACGCTGAGAAGTATGACGGATAAGCTTAATAA
GAAGATAGTCAGCGTTTTACAGATGGGAAAGCTGATAAACGAATTGAAGG
AAGAGTTGCAAAAAAGGAATTTGATTAAAACGGGTGTCACTAAGGGCGCT
GAACCAAGTTTGGCTGGTGTTCCATCCGCTAGCACCATTTCACCATTTCA
GTCCGCTTCGGATTTCCTCAACAACTTCATCTTTAAGAATATCAGACCAG
ATGACAATAAATCCATGACGAGCGTGAATAGAGAGATCACTACTAAGAAG
CTGGAGACTCCCTCTGCGATCCATTTTGATCAAATGCAAGGAGGTCGAGT
CTGTTGCCATTTCCAACTCGCCAACAAAGCAAGTGGCGTTTTCTCCTATC
AGAAATAAGCCATATCGAAAAGAAAATTTGAAAAAGACGATGCTTTCTTC
TCAGAAAAGCAGGTGTCCCAATGCGATAGAAAAAGAACGTGACGAATGAG
CCCAGAACGAAGATTGAGGAAAATATCGAAAA
UFO05614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8316-RA | 1984 | CG8316-RA | 49..1078 | 9..1022 | 4480 | 96.8 | Plus |
| CG8316-RB | 1978 | CG8316-RB | 49..1072 | 9..1022 | 4380 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17631527..17631817 | 417..127 | 1455 | 100 | Minus |
| X | 23542271 | X | 17630815..17631131 | 919..604 | 1380 | 97.8 | Minus |
| X | 23542271 | X | 17631182..17631370 | 605..417 | 945 | 100 | Minus |
| X | 23542271 | X | 17631882..17631999 | 126..9 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader6 | 4885 | invader6 INVADER6 4885bp | 1076..1139 | 35..98 | 140 | 68.8 | Plus |
| TART-A | 13424 | TART-A 13424bp | 5820..5869 | 566..615 | 115 | 70 | Plus |
UFO05614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:59 Download gff for
UFO05614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8316-RA | 22..999 | 9..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:04 Download gff for
UFO05614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8316-RA | 49..1026 | 9..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:50 Download gff for
UFO05614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8316-RA | 49..1026 | 9..981 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:50 Download gff for
UFO05614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17631882..17631999 | 9..126 | 100 | | Minus |
| X | 17630743..17631129 | 606..981 | 94 | <- | Minus |
| X | 17631182..17631369 | 418..605 | 100 | <- | Minus |
| X | 17631527..17631817 | 127..417 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:04 Download gff for
UFO05614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17524776..17525162 | 606..981 | 94 | <- | Minus |
| arm_X | 17525215..17525402 | 418..605 | 100 | <- | Minus |
| arm_X | 17525560..17525850 | 127..417 | 100 | <- | Minus |
| arm_X | 17525915..17526032 | 9..126 | 100 | | Minus |
