UFO05616.5prime Sequence
1090 bp (972 high quality bases) assembled on 2009-07-15
> UFO05616.5prime
CAGTCGACATGATGGCGCTCGACGGCAAGGCGATAATTAAGGAGGAGATT
ACCGACAAGGACGCTTACGACGCAGCTGCGGCGGCGGCAGCGGCGGTGGC
AGCGGGAGCCGCTCTGGCGGTGGCCTCTGCTGCGGCCGTCCAGGTGCCAC
CCGCGTCATCGTCCTCGGCGGGATCAGCGTCATCGGCAGCCGCCGCGGCC
ACCAACAACACAACATCGGCGGCAGCCACAGCGGCGGCAATTAGTCGTCG
GCTTAAAGCCAGCAGCAGCGGCGGGGACAAGAGCTCCACCTCATCCTCGA
GCAGCAAGGACAGCAGCCACACCTCCAGCAGCAGGAGCGAGAGGGACAGG
GAGAGGGAGCGAGAACGGGAGCGGGAACGCGACCGCCTGTGCCGCACTCC
GCCGGACTCTCCGCCGGACAGCTCGCGCAGCCTGGCCCCCCGCTCGCCCC
ACTCCCCACTACAGTTGCACCAGCATCCGCAGCGCAACGCCAGCGTTTCC
CCGGTGGTCAATGGATCCTCCTCGGGTGGAGGAGGCGTGGGATCCTCCGG
CACTTCGCCTACGCCCACACCGGGCAGTCAGCATGCCGCCTCCTTGGCCG
CAGCCGCCGCCGCCGCTGCAGCCGCCCACGTGGAGCAGGCGCGACTGGTT
TCCAAGATGCGCAAGTTCCTGGGCGCCCTGGTCCAATTCTCCCAGGAACT
GGGACAGCCGGAGGTGTGCGAAAGGGTGCGCGCCCTGTGCTGTCCCTCTG
CAGCGGCAGCATCTCCGTGGAGGAGTTCCGGCTGGCCCTGCAGGAGGCCA
TCAACCTGCCACTCCGGCCCTATGTGGTTCCGCTCCTCAAAAACAGCATC
GCTCTGGTGCAGCGGGAGATTCTGGCACTGGCCAGAGCCACCAACCAATC
CGCCTGCAGTACGTGACAACACGAGCAGGCGGTGATGGAGTCGCTCCCCA
CGGAGGGCAGTGCCGAGTTCGGGACATATCATCAGCTGGAGGCACCCACA
TCAAACGGCAAGCAGGGCGGTCTTCAAGCGCCGCCTCCCCCGGAACTTCA
TTATATGGAGACATGCGCCAAAACGCCTGGCAAGAAGTGA
UFO05616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 3426 | CG3385-RD | 396..1430 | 9..1034 | 4890 | 98.8 | Plus |
| nvy-RA | 3426 | CG3385-RA | 396..1430 | 9..1034 | 4890 | 98.8 | Plus |
| nvy-RC | 3104 | CG3385-RC | 76..1108 | 11..1034 | 4880 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24288023..24288809 | 257..1034 | 3405 | 97.8 | Plus |
| 2R | 25286936 | 2R | 24284827..24285074 | 11..258 | 1240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 559..717 | 240..86 | 137 | 56.9 | Minus |
UFO05616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:00 Download gff for
UFO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 385..1441 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:49 Download gff for
UFO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 388..1444 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:29 Download gff for
UFO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 388..1444 | 1..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:29 Download gff for
UFO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24284820..24285074 | 1..258 | 98 | -> | Plus |
| 2R | 24288025..24288823 | 259..1051 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:49 Download gff for
UFO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20172343..20172597 | 1..258 | 98 | -> | Plus |
| arm_2R | 20175548..20176346 | 259..1051 | 97 | | Plus |
