UFO05618.5prime Sequence
992 bp (868 high quality bases) assembled on 2009-07-15
> UFO05618.5prime
CAGTCGACATGCGTCTCGACACGAACTCAAATGTGGACTTCAAAGCATTC
GAATCCAGCTCAAGCTCATGTCCTGTCAAATTGGATAACCTGGCCACCTG
GGGTGGCTCACAGAAAACAGACACACGACTGCCGATCACGGACTACTCCA
ATCTGGGCGGACCCCGGCACAATCGCAGTCCCTTTCCACTCTGCAAAGAT
GTCAACAATCGCTTCGTAATCTGGGATGGGGACATGACCACTCTGGAGGT
GGACGCCATCACAAACACCAGCGATGAGACTCTGACTGAAAGCAATAGCA
TATCGGAGCGCATCTTCGCAGTGGCTGGTAATCAGCTGCGCGAGGAGCTG
AGCACAACGGTTAAAGAATGCCGCACTGGCGATGTGCGCATCACGCGTGG
ATACAATCTGCCCGCCAAGTACGTGCTGCATACAGTGGCACCTGCCTACA
GGGAAAAGTTCAAGACGGCTGCCGAGAATACGCTGCACTGCTGCTACAGA
AATGTCCTGTGCAAGGCGAAGGAACTTAACCTGCACACCATCGCCCTGTG
CAACATCAGTGCCCACCAGAAGAGCTTTCCCGCGGATGTGGCAGCCCACA
TTGCCCTGCGTACCATTCGTCGCTATCTGGACAAGTGCACCCTGCAGGTT
GTGATATTGTGCGTGGGCAGCAGCGAGCGCGGCACTTACGAGGTCCTGGC
CCCACTGTACTTCCCCAGGGATCAGCTGGAGGAGCGCAGTGCCCTGTGCA
GCTGCCCAAGGACATTGGCGGCGAGTTCGGGGAGCCGCACATCCGGATCC
CGATCGCCAGAATACGCATCATCCGCATCCGCAGCACAGTGTCCACATGC
GTCATCATTTAGCCGACGACGATTCAGACGTGAGTCCCACGACTGGAGGG
CATAGTTCGGATTCTGGAGTACGGAGCTCGGGATATGACGTCTCAGCTGA
TCGTACGCAGCGGATGCAAGCTCAGCTTCCACCCGATCTGAC
UFO05618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-RC | 2689 | CG18812-RC | 251..1243 | 9..990 | 4550 | 98.1 | Plus |
CG18812-RF | 2894 | CG18812-RF | 474..1455 | 9..979 | 4540 | 98.4 | Plus |
CG18812-RD | 1719 | CG18812-RD | 137..273 | 863..990 | 365 | 89.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7727942..7728196 | 862..610 | 1080 | 98.4 | Minus |
2R | 25286936 | 2R | 7729429..7729581 | 224..72 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7729016..7729163 | 366..219 | 725 | 99.3 | Minus |
2R | 25286936 | 2R | 7728825..7728959 | 499..365 | 675 | 100 | Minus |
2R | 25286936 | 2R | 7728267..7728381 | 611..497 | 575 | 100 | Minus |
2R | 25286936 | 2R | 7729642..7729704 | 71..9 | 315 | 100 | Minus |
2R | 25286936 | 2R | 7725918..7725997 | 938..861 | 205 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:28 has no hits.
UFO05618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:09 Download gff for
UFO05618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 243..1204 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:50 Download gff for
UFO05618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 246..1207 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:32 Download gff for
UFO05618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 246..1207 | 1..956 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:32 Download gff for
UFO05618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7729016..7729158 | 224..366 | 100 | <- | Minus |
2R | 7729430..7729581 | 72..223 | 100 | <- | Minus |
2R | 7729642..7729708 | 1..71 | 94 | | Minus |
2R | 7725895..7725995 | 863..956 | 91 | <- | Minus |
2R | 7727942..7728196 | 610..862 | 98 | <- | Minus |
2R | 7728269..7728378 | 500..609 | 100 | <- | Minus |
2R | 7728825..7728957 | 367..499 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:50 Download gff for
UFO05618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3613400..3613500 | 863..956 | 91 | <- | Minus |
arm_2R | 3615447..3615701 | 610..862 | 98 | <- | Minus |
arm_2R | 3615774..3615883 | 500..609 | 100 | <- | Minus |
arm_2R | 3616330..3616462 | 367..499 | 100 | <- | Minus |
arm_2R | 3616521..3616663 | 224..366 | 100 | <- | Minus |
arm_2R | 3616935..3617086 | 72..223 | 100 | <- | Minus |
arm_2R | 3617147..3617213 | 1..71 | 94 | | Minus |