Clone UFO05618 Report

Search the DGRC for UFO05618

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:56
Well:18
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG18812-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05618.5prime Sequence

992 bp (868 high quality bases) assembled on 2009-07-15

> UFO05618.5prime
CAGTCGACATGCGTCTCGACACGAACTCAAATGTGGACTTCAAAGCATTC
GAATCCAGCTCAAGCTCATGTCCTGTCAAATTGGATAACCTGGCCACCTG
GGGTGGCTCACAGAAAACAGACACACGACTGCCGATCACGGACTACTCCA
ATCTGGGCGGACCCCGGCACAATCGCAGTCCCTTTCCACTCTGCAAAGAT
GTCAACAATCGCTTCGTAATCTGGGATGGGGACATGACCACTCTGGAGGT
GGACGCCATCACAAACACCAGCGATGAGACTCTGACTGAAAGCAATAGCA
TATCGGAGCGCATCTTCGCAGTGGCTGGTAATCAGCTGCGCGAGGAGCTG
AGCACAACGGTTAAAGAATGCCGCACTGGCGATGTGCGCATCACGCGTGG
ATACAATCTGCCCGCCAAGTACGTGCTGCATACAGTGGCACCTGCCTACA
GGGAAAAGTTCAAGACGGCTGCCGAGAATACGCTGCACTGCTGCTACAGA
AATGTCCTGTGCAAGGCGAAGGAACTTAACCTGCACACCATCGCCCTGTG
CAACATCAGTGCCCACCAGAAGAGCTTTCCCGCGGATGTGGCAGCCCACA
TTGCCCTGCGTACCATTCGTCGCTATCTGGACAAGTGCACCCTGCAGGTT
GTGATATTGTGCGTGGGCAGCAGCGAGCGCGGCACTTACGAGGTCCTGGC
CCCACTGTACTTCCCCAGGGATCAGCTGGAGGAGCGCAGTGCCCTGTGCA
GCTGCCCAAGGACATTGGCGGCGAGTTCGGGGAGCCGCACATCCGGATCC
CGATCGCCAGAATACGCATCATCCGCATCCGCAGCACAGTGTCCACATGC
GTCATCATTTAGCCGACGACGATTCAGACGTGAGTCCCACGACTGGAGGG
CATAGTTCGGATTCTGGAGTACGGAGCTCGGGATATGACGTCTCAGCTGA
TCGTACGCAGCGGATGCAAGCTCAGCTTCCACCCGATCTGAC

UFO05618.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG18812-RC 2689 CG18812-RC 251..1243 9..990 4550 98.1 Plus
CG18812-RF 2894 CG18812-RF 474..1455 9..979 4540 98.4 Plus
CG18812-RD 1719 CG18812-RD 137..273 863..990 365 89.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7727942..7728196 862..610 1080 98.4 Minus
2R 25286936 2R 7729429..7729581 224..72 765 100 Minus
2R 25286936 2R 7729016..7729163 366..219 725 99.3 Minus
2R 25286936 2R 7728825..7728959 499..365 675 100 Minus
2R 25286936 2R 7728267..7728381 611..497 575 100 Minus
2R 25286936 2R 7729642..7729704 71..9 315 100 Minus
2R 25286936 2R 7725918..7725997 938..861 205 95.1 Minus
Blast to na_te.dros performed on 2014-11-28 20:06:28 has no hits.

UFO05618.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:09 Download gff for UFO05618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 243..1204 1..956 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:50 Download gff for UFO05618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 246..1207 1..956 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:32 Download gff for UFO05618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18812-RC 246..1207 1..956 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:32 Download gff for UFO05618.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7729016..7729158 224..366 100 <- Minus
2R 7729430..7729581 72..223 100 <- Minus
2R 7729642..7729708 1..71 94   Minus
2R 7725895..7725995 863..956 91 <- Minus
2R 7727942..7728196 610..862 98 <- Minus
2R 7728269..7728378 500..609 100 <- Minus
2R 7728825..7728957 367..499 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:50 Download gff for UFO05618.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3613400..3613500 863..956 91 <- Minus
arm_2R 3615447..3615701 610..862 98 <- Minus
arm_2R 3615774..3615883 500..609 100 <- Minus
arm_2R 3616330..3616462 367..499 100 <- Minus
arm_2R 3616521..3616663 224..366 100 <- Minus
arm_2R 3616935..3617086 72..223 100 <- Minus
arm_2R 3617147..3617213 1..71 94   Minus