UFO05620.5prime Sequence
1045 bp (936 high quality bases) assembled on 2009-07-15
> UFO05620.5prime
CAGTCGACATGACAGGAATAATGGACTCGGTGGAAATGCCCAAATTACCG
GAAAACCAGAAGACCTTCGCCGGCATCCCGGAGGCAGTGTTCCTGGAGGA
GATCGACACCTTCATGTCGCAGCCGGAGAACGAAAATTGCGAAAAGGTGC
TGCAGCGACTGGACGAGCAGCACGGCAAGTATCGATTCATGGCCTGCAAT
CTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCAAATTCCGGACCTGGAGCG
CTCCCTGGAAATGGTCAATGTGCTTCGCAAGGAGGACGAGGAGCGCGAGA
CGCAATTCCTGCTCAGCGACCAGGTGTTCATCAAGACACTGGTGCCGCCC
ACGAAAACAGTATACCTCTGGCTGGGGGCCAGCGTGATGCTGGAGTATCC
GCTAGACGAGGCGGAGGCTCTGCTGAACCAGAACATCACATCGGCCGTGG
GCAACCTAAAGTCCGTGGAGCACGATCAGGATTTTCTGAGGGATCAAATC
ACAACTACGGAGGTGAACATGGCGCGGGTCTACAACTGGGGCGTGAAAAA
GCGGCAGGCCGCTACCAAGACCACCGCCACTACCCCATCCGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTGTATCATTAGCATTCTGCGACATGAGCATCACAAACGCATGAT
GACTGATCGCAGCGCATCAGCACTGTCGCTGCGTATATATTTGCCATGTG
AAACGGGGCGAGAGTGTCAATGCCACGTTTAATTCAAACTGGTGACTCAC
CAGATGCTGAACGAAAACATTTCCATAACTTTAAGGAATGGCCAG
UFO05620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mgr-RA | 946 | CG6719-RA | 108..689 | 9..590 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11409209..11409605 | 491..95 | 1985 | 100 | Minus |
| 3R | 32079331 | 3R | 11409049..11409150 | 590..489 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 11409681..11409768 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:09 has no hits.
UFO05620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:11 Download gff for
UFO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6719-RA | 106..695 | 1..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:38 Download gff for
UFO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mgr-RA | 104..693 | 1..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:54 Download gff for
UFO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mgr-RA | 104..693 | 1..595 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:54 Download gff for
UFO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11409045..11409148 | 491..595 | 98 | <- | Minus |
| 3R | 11409210..11409604 | 96..490 | 100 | <- | Minus |
| 3R | 11409682..11409772 | 1..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:38 Download gff for
UFO05620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7234767..7234870 | 491..595 | 98 | <- | Minus |
| arm_3R | 7234932..7235326 | 96..490 | 100 | <- | Minus |
| arm_3R | 7235404..7235494 | 1..95 | 95 | | Minus |
