UFO05621.5prime Sequence
988 bp (851 high quality bases) assembled on 2009-07-15
> UFO05621.5prime
CAGTCGACATGGCGGCCCAAATACGCACCGTGGTGTCCCAAACGTTCCTG
TGGCTCTTCCTCGCCGTGGCCACCATCCTGACCCTGTACTTCGTGATGAC
GGGCAAGGGCGAGCGGGTGAGCGTGGGCTGGTTCCTGGCCTCCTCAAACC
CGTACATGTGGGCCTGCCTGGGCATCGGACTCTCCGTCTCGCTGTCCGTC
GTGGGCGCCGCCCTGGGCATCCATACGACGGGCACGAGCATCGTGGGCGG
TGGTGTGAAGGCGCCCCGCATCAAGACCAAGAATCTGATCTCGGTCATCT
TCTGCGAGGCCGTGGCCATCTACGGCCTGATCACCGCCATCGTTCTGTCC
GGCCAGCTGGAGCAGTTCTCGATGGAGACGGCCCTTTCGCAGGCGGCTAT
TCAGAACACGAACTGGTTCTCCGGCTACCTCATCTTCGGTGCTGGCCTGG
CTGTCGGCCTGGTCAATCTGTTCTGCGGCATTGCTGTGGGCATTGTGGGT
TCGGGTGCCGCCCTCTCGGACGCCGCCAATGCCGCCCTGTTCGTCAAGAT
CCTTATTGTGGAGATCTTCGGTTCGGCCATCGGTCTGTTCGGCCTCATCG
TGGGCATCTACATGACCTCCAAGTCCAAGATGGGCGACAAGGAGGCAAGC
TTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATTTTTT
CACAGGAGTCCAAGCGAGCTCGATTATCAATTACCGCCCCGCCCTTGCCA
CTCATCGCAGTACTTGTTGTTATTCATTAAGCATTCTGCGACATGCAGCA
TCAAAACGCATGATGACTGAATCGCAGCGCATCAGACT
UFO05621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaPPA1-1-RB | 1348 | CG7007-RB | 127..762 | 9..644 | 3180 | 100 | Plus |
| VhaPPA1-1-RA | 1352 | CG7007-RA | 131..766 | 9..644 | 3180 | 100 | Plus |
| VhaPPA1-2-RB | 672 | CG7026-RB | 471..621 | 473..623 | 395 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14903237..14903872 | 644..9 | 3180 | 100 | Minus |
| 3R | 32079331 | 3R | 14899657..14899807 | 623..473 | 395 | 84.1 | Minus |
| 3R | 32079331 | 3R | 14899927..14900154 | 353..126 | 345 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:21 has no hits.
UFO05621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:13 Download gff for
UFO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaPPA1-1-RA | 137..784 | 1..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:12 Download gff for
UFO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaPPA1-1-RA | 137..784 | 1..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:18 Download gff for
UFO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaPPA1-1-RA | 124..771 | 1..650 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:18 Download gff for
UFO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14903232..14903878 | 1..650 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:12 Download gff for
UFO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10728954..10729600 | 1..650 | 98 | | Minus |
