UFO05622.5prime Sequence
1034 bp (927 high quality bases) assembled on 2009-07-15
> UFO05622.5prime
CAGTCGACATGGACGGCGTTAAGGTTGAGACGTTCATCAAAAGCGAAGAA
AACCGAGCGATGCCCTTGATCGGAGGAGGCAGTGCCTCAGGCGGCACTCC
TCTGCCAGGAGGCGGCGTGGGAATGGGAGCCGGAGCATCCGCAACGTTGA
GCGTGGAGCTGTGTTTGGTGTGCGGGGACCGCGCCTCCGGGCGGCACTAC
GGAGCCATAAGCTGCGAAGGCTGCAAGGGATTCTTCAAGCGCTCGATCCG
GAAGCAGCTGGGCTACCAGTGTCGCGGGGCTATGAACTGCGAGGTCACCA
AGCACCACAGGAATCGGTGCCAGTTCTGTCGACTACAGAAGTGCCTGGCC
AGCGGCATGCGAACTGTGCAGCACGAGAGGAAACCGATTGTGGACAGGAA
GGAGGGGATCATCGCTGCTGCCGGTAGCTCATCCACTTCTGGCGGCGGTA
ATGGCTCGTCCACCTACCTATCCGGCAAGTCCGGCTATCAGCAGGGGCGT
GGCAAGGGGCACAGTGTAAAGGCCGAATCCGCGGCCACGCCTCCAGTGCA
CAGCGCGCCAGCAACGGCCTTCAATTTGAATGAGAATATATTCCCGATGG
GTTTGAATTTCGCAGAACTAACGCAGACATTGATGTTCGCTACCCAACAG
CAGCAGCAACAACAGCAACAGCATCAACAGAGTGGGTAGCTATTCGCCAG
ATATTCCGAAAGGCAGATCCCGAGGATGACGAGGACGACTCAATGGACAA
CAGCAGCACGCTGTGCTTGCAGTTGCTCGCCAACAGCGCCAGCAACAACA
ACTCGCAGCACCTGAACTTTAATGCTGGGGAAGTACCCACCGCTCTGCCT
ACCACCTCGACAATGGGGCTTATTCAGAGTTCGCTGGACATGCGGTCATC
CACAGGACTGCAGATCCTGCAGCCCATCAAAACACTGAGCGAATGTATCT
GATGTGAGCCCGATGCATCGAAGCGAGACGTGCACGAGATGCGTAACGCG
GACTGGAACACATGTACTAGACTGATGCGTGGAC
UFO05622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RA | 2339 | CG7199-RA | 253..1177 | 9..932 | 4505 | 99.4 | Plus |
| Hr78-RF | 2175 | CG7199-RF | 83..1013 | 9..932 | 4435 | 98.7 | Plus |
| Hr78-RE | 2182 | CG7199-RE | 90..1020 | 9..932 | 4435 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21496427..21496743 | 363..47 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 21495599..21495868 | 633..364 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 21495181..21495480 | 932..634 | 1280 | 98 | Minus |
| 3L | 28110227 | 3L | 21496820..21496859 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2509 | 645..816 | 163 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6914 | 645..812 | 154 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2398 | 645..679 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6861 | 645..679 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2484 | 644..809 | 147 | 57.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1029 | 644..700 | 147 | 75.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6932 | 645..811 | 144 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1587 | 645..678 | 143 | 91.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2341 | 637..679 | 143 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2577 | 645..835 | 143 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2665 | 646..679 | 143 | 91.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6765 | 645..679 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6828 | 645..679 | 139 | 88.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..568 | 645..679 | 139 | 88.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1146 | 645..679 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2441 | 645..680 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2825 | 645..680 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6814 | 645..680 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6901 | 644..677 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2658 | 645..812 | 132 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6925 | 644..845 | 132 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2847 | 645..690 | 131 | 76.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2386 | 645..679 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6840 | 645..679 | 130 | 85.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1099 | 638..680 | 130 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6592..6676 | 640..722 | 130 | 67.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8048..8132 | 640..722 | 130 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2414 | 645..680 | 126 | 83.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1121..1154 | 645..678 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2488 | 645..679 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6819 | 645..679 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1113 | 645..679 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1144 | 646..680 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1158 | 645..679 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6750 | 647..679 | 120 | 84.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1133..1165 | 645..677 | 120 | 84.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3323 | 645..677 | 120 | 84.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2090..2122 | 645..677 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1549 | 638..679 | 119 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6568 | 645..680 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6877 | 645..680 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6913 | 645..680 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2982 | 645..812 | 116 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6883 | 645..680 | 116 | 82.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1567 | 645..679 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2404 | 645..679 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2839..2958 | 643..757 | 109 | 60.3 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7422..7450 | 645..673 | 109 | 86.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7951..7988 | 638..675 | 109 | 76.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9395..9432 | 638..675 | 109 | 76.3 | Plus |
UFO05622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:53 Download gff for
UFO05622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 211..1161 | 1..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:20 Download gff for
UFO05622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 242..1192 | 1..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:08 Download gff for
UFO05622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 242..1192 | 1..943 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:08 Download gff for
UFO05622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21495166..21495480 | 634..943 | 97 | <- | Minus |
| 3L | 21495599..21495868 | 364..633 | 100 | <- | Minus |
| 3L | 21496427..21496741 | 49..363 | 100 | <- | Minus |
| 3L | 21496820..21496864 | 1..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:20 Download gff for
UFO05622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21489527..21489841 | 49..363 | 100 | <- | Minus |
| arm_3L | 21489920..21489964 | 1..48 | 91 | | Minus |
| arm_3L | 21488266..21488580 | 634..943 | 97 | <- | Minus |
| arm_3L | 21488699..21488968 | 364..633 | 100 | <- | Minus |
