UFO05623.5prime Sequence
1034 bp (920 high quality bases) assembled on 2009-07-15
> UFO05623.5prime
CAGTCGACATGGCCGGCCCACTTCCTCCGCTCAACCAGGAGGCAGCGTTC
CAGAAGCTGCAGGAGTACTACGACTCCAAGGGCAAGGACCTGAACATCAA
GGACCTGTTCGTGAAGGATTCCAAGAGATTCTCAAAATACAGCCTGCGCC
TGCACACCCAGAACGATGGCGAGATACTGCTGGACTACTCGAAGAACCGT
ATCAATGACGAGGTCTGGGATCTGCTCCTCACCCTGGCCAAGGTGCGCCG
CGTTAACGCCGCGCGGGACGCCATGTTCTCCGGCCAGCACATTAACATCA
CGGAGAACCGCGCCGTCCTCCACACGGCCCTGCGCAACCGCGGCACGGAT
CCCGTCCTGGTGGACGACAAGGACGTGATGCCCGATGTGCGCGCCGAACT
GGCCCACATGAAGGAGTTCACCAACATGGTCATCTCCGGCGTGTGGCGCG
GCTGCACCGGCAAACAGATCACCGACGTGGTCAACATCGGCATCGGTGGC
TCCGATCTGGGCCCGCTGATGGTCACCGAAGCGCTGAAGCCCTACGGCAA
GGGCCTTCACTCCCACTTTGTGTCGAACATCGATGGCACTCATCTGGCCG
AGGTCCTCAAGAAGGTCAACTACGAGACCACCCTCTTCATTGTCGCCTCA
AAAACTTTCACCACCCAGGAGACCATTACGAACGCCACCTCCGCCAAGAC
CTGGCTCCTGTGCATTCCAAGGAGCCTGAGTCCGTGGCCCAAGCATTTTG
TGGCCCTGTCGACCAACAAGGAAAAGGTCACCGAATTCGGCATTGACAGC
ACCAACATGTTCGGTTTTGGGATTGGGTGGGCGGTCGCTACTCCCTGTGT
CGGCCATTGACTGTCAATCTGTCTGTCATTGCTTTGAGAACTTTGAGCAC
TGCTGATGAGCTCACTTCATGACACCATTCAGACGACTCATCGAGAAAGA
ATGCTCCTGTTATCTGCGTTGCTAGCGTTTGTACTCCACCTTCTCAGCGA
AAACATGGCCTCCTCCCTACGATTAGTACTGGAC
UFO05623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgi-RC | 2277 | CG8251-RC | 321..1365 | 9..1030 | 4495 | 96.9 | Plus |
| Pgi-RB | 2321 | CG8251-RB | 365..1409 | 9..1030 | 4495 | 96.9 | Plus |
| Pgi-RA | 2460 | CG8251-RA | 504..1548 | 9..1030 | 4495 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8912605..8913190 | 724..140 | 2865 | 99.7 | Minus |
| 2R | 25286936 | 2R | 8913433..8913566 | 142..9 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 8912078..8912258 | 899..723 | 615 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:14 has no hits.
UFO05623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:56 Download gff for
UFO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RC | 418..1420 | 9..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:39 Download gff for
UFO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 497..1506 | 1..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:06 Download gff for
UFO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgi-RA | 497..1506 | 1..994 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:06 Download gff for
UFO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8912017..8912256 | 725..952 | 92 | <- | Minus |
| 2R | 8912605..8913187 | 143..724 | 99 | <- | Minus |
| 2R | 8913433..8913572 | 1..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:39 Download gff for
UFO05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4799522..4799761 | 725..952 | 92 | <- | Minus |
| arm_2R | 4800110..4800692 | 143..724 | 99 | <- | Minus |
| arm_2R | 4800938..4801077 | 1..142 | 97 | | Minus |
