UFO05624.5prime Sequence
1032 bp (908 high quality bases) assembled on 2009-07-15
> UFO05624.5prime
CAGTCGACATGTCCGGTATTGGCATCAATGGCTTTGGCCGAATCGGTCGC
ATGTTTGCCCGCCAGGCTCTAGTTCGCAAAGATGTCAAGATCGTGGCAAT
CAACGATCCCTCACTGGATCCCAAGTATCTGGCCTACATGCTGCGATACG
ACTCCACTCATGGACAGTTCAATCAGAAGATCTCTGTCGACGGGAACAAT
CTTGTTGTTAATGGCAAGAAGATCCAGCTGCTTAAGGAGTCGGACGTCAA
GAAGATTAAATGGTGCGACCTGGGCGTGCATACGGTGGTGGAGTGCTCCG
GTAGGTTTACCACCCTGAAAGCCTGTCAAGGTCACTTGGATAGTGGGGCC
AAAAAGGTGGTCATATCGGCACCATCTGCCGATGCTCCGATGTTTGTGTG
CGGAGTGAATCTTGAGGCATACAAGCCGGGCACAGCAATCATCTCGAATG
CCTCATGCACAACCAATTGCCTGGCGCCGCTGGCCAAGGTGGTGCACGAT
AACTTTGAAATATGTGAGGGCCTTATGACCACCGTTCATGCGGCTACAGC
TACCCAAAAGATCATCGACGGACCCAGCAGCAAACTCTGGCGGGATGGAC
GCAGTGGCATGACCAACATCATACCCGCATCCACGGGAGCCGCTAAAGCC
GTCGGCAAGGTGATTCCGGATCTAAACGGGAAGCTAACGGGTATGGCTTT
CCGTGTACCAGTTCCCAATGTCTCGGTGGTGGACCTCACCTGTAGGCTTT
CTAAGCCCGCCAAAATGGACGATATCAAGAAGTGCATAAAGGCTGCATCC
AAATGCGAAATGAAGGATCCTGGGGTATGTGAGGGAGGGAGGTGTGTCCA
CCGATTTTAACGGCTCACGATTTGCATCGTCTTTGATGCCAGGCTGTATG
CCCTAACGATACTTCGTCAGTTGATCAGTTGTACGATACGAGACCGATAT
TCCTGCCGTCTCTGACCTAGTCTCTATGCCAGTGTCGACCATGCATGCAA
GAAAAGGTGCTGCGCAGCCTCTAAACATCGTT
UFO05624.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9010-RA | 1253 | CG9010-RA | 101..1101 | 9..991 | 4510 | 97.8 | Plus |
| Gapdh2-RC | 1377 | CG8893-RC | 372..770 | 332..730 | 455 | 75.6 | Plus |
| Gapdh2-RA | 1443 | CG8893-RA | 438..836 | 332..730 | 455 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16959210..16960095 | 891..9 | 4225 | 99 | Minus |
| X | 23542271 | X | 15868656..15869054 | 332..730 | 420 | 73.7 | Plus |
| 2R | 25286936 | 2R | 7792392..7792784 | 740..348 | 405 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:55 has no hits.
UFO05624.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:58 Download gff for
UFO05624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 47..1043 | 4..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:24 Download gff for
UFO05624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 95..1091 | 4..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:28 Download gff for
UFO05624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9010-RA | 95..1091 | 4..983 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:28 Download gff for
UFO05624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16959105..16960101 | 4..983 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:24 Download gff for
UFO05624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12846610..12847606 | 4..983 | 97 | | Minus |
