UFO05626.5prime Sequence
1063 bp (975 high quality bases) assembled on 2009-07-15
> UFO05626.5prime
CAGTCGACATGTCCGGAATCATGCGTGTGCCATCGATTTTGGCCAAAAAT
GCAGTCGCCTCCATGCAACGTGCCGCAGCCGTTGGAGTGCAGCGCAGTTA
CCACATCACACACGGCCGCCAGCAGGCCTCGGCGGCGAATCCGGACAAGA
TATCGAAGCAGTACCCGGTGGTGGATCACGCCTACGATGCGATCGTCGTG
GGAGCAGGAGGAGCCGGCTTGCGGGCGGCTTTTGGCCTGGTGGCTGAGGG
ATTTCGCACGGCGGTGATCACCAAGCTTTTCCCCACCCGCTCGCACACGA
TCGCCGCCCAGGGCGGTATCAATGCCGCTCTCGGCAACATGGAGGAGGAC
GACTGGAAGTGGCACATGTACGACACGGTCAAGGGCTCCGATTGGCTGGG
CGACCAGGATGCCATCCACTACATGACCCGCGAGGCGCCCAAGGCTGTCA
TTGAGCTGGAGAACTACGGCATGCCCTTCTCGCGTACCCAGGACGGTAAG
ATCTACCAGCGCGCCTTCGGTGGACAGAGTCTGAAGTTCGGCAAGGGCGG
ACAGGCCCATCGCTGCTGTGCTGTGGCTGATCGTACTGGTCACTCGCTGC
TGCACACGCTATACGGTCAATCGCTGAGCTACGACTGCAACTACTTTGTG
GAGTACTTTGCCCTGTATCTGATCTTCGAGGACGGCGAGTGCCGTGGTGT
GCTGGCCCTGAACCTGGAGGATGGCACACTGCACCGATTCCGCGCTAAGA
ACACGGTCATTGCCACCGGTGGATATGGACGAGCATTCTTCTCCTGCACC
TCGGCGCACACATGTACCGGTGACGGTACTGCTATGGTTGCACGCCAGGG
ACTGCCCTCTCAGGATCTGGAGTTCGTGCAGTTCATCCTACTGGCATCTA
CGGCGCGATGTCTCATCACCGAGGCTGCCGCGGGTGGAGGTGTACCTGAT
CACGGTAATGGTGGAGCGCTTCATGACGCTATGCTCTGTGCAGATCTGCT
TCTCGGGACGTCGTCTCGTCGATGACATCGGAGATCATGGAGGTCTGGCT
GAACCGGAAAGAT
UFO05626.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhA-RA | 2750 | CG17246-RA | 227..1279 | 7..1043 | 4715 | 97.4 | Plus |
| SdhA-RC | 2663 | CG17246-RC | 140..1192 | 7..1043 | 4715 | 97.4 | Plus |
| SdhA-RB | 2617 | CG17246-RB | 94..1146 | 7..1043 | 4715 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19393582..19394444 | 924..65 | 4185 | 99.5 | Minus |
| 3L | 28110227 | 3L | 11924225..11924551 | 511..185 | 450 | 75.8 | Minus |
| 2R | 25286936 | 2R | 19395687..19395745 | 65..7 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:28 has no hits.
UFO05626.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:16 Download gff for
UFO05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scs-fp-RA | 185..1260 | 1..1055 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:17 Download gff for
UFO05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 87..1162 | 1..1055 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:23 Download gff for
UFO05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 87..1162 | 1..1055 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:23 Download gff for
UFO05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19393434..19394443 | 66..1055 | 96 | <- | Minus |
| 2R | 19395687..19395752 | 1..65 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:17 Download gff for
UFO05626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15280939..15281948 | 66..1055 | 96 | <- | Minus |
| arm_2R | 15283192..15283257 | 1..65 | 95 | | Minus |
