UFO05630.5prime Sequence
1123 bp (982 high quality bases) assembled on 2009-07-15
> UFO05630.5prime
CAGTCGACATGCCGCAAAAGACAAACGGACATAGCGCCAACGGATGCAAC
GGCAGCAATGGCAACTCATATGACATGGAAGACGGAGCTACATTCCTGTT
CACTTCCGAGTCCGTTGGCGAGGGTCATCCAGACAAAATGTGCGACCAAA
TCAGCGACGCTATCTTGGATGCCCATCTGAAGCAGGATCCAAACGCGAAG
GTGGCGTGTGAAACCGTCGCCAAGACGGGCATGATTCTGCTGTGCGGCGA
GATCACGTCTAAGGCTGTGGTCGACTACCAGAAGGTTGTTCGTGAGACAG
TGCAGCACATTGGTTATGATGACTCCTCCAAGGGTTTCGATTTCAAAACG
TGCAATGTGCTGTTGGCATTGGACCAACAATCGCCTGAGATCGCTGCGGG
AGTGCATGTCAACCGTGCCGAGGAAGAGATCGGTGCCGGAGATCAGGGTA
TCATGTTTGGATATGCCACCGACGAAACCGAGGAATGTATGCCCCTAACC
GTCGTTTTGGCTCACAAACTAAACGAAAAGATTGCTGAGCTGCGTCGCTC
AGATGTGTTCTGGTGGGCTCGCCCCGATTCCAAAACACAAGTAACCTGCG
AGTACCTCTTCAATCAGGGATCAGCAGTTCCCAAGCGTGTCCACACTATT
GTAGTGTCCATGCAGCATTCTGAAAAGATATCGTTAGAAACCCTGCGCTC
GGAAGTAATGGAGAAAGTTGTTAAAGTAGTCATTCCCGCCAAATACATTG
ATGCCAACACCATTGTCCACATCAATCCTTGTGGGCTTTTTGTAATCGGT
GGACCAATGGGTGACGCTGGGCTTACAGGAAGAAAAATCATTGTAGATAC
TTACGGAGGCTGGGGCGCCCCACGGCGGCGGTGCATTCTCTGGCAAGGAC
TTCACCAAGTTGACAGATCAGCTGCATATGCAGCACGCTGGGTGGCCAAA
TCACTGGTTACGCCGTCTTCTGCAGCGCTGCCTTGTCAGTGTCTACGCCA
TAGTCTTGCTGACCTCTCTCCCATACTGGTGTTCGACTACGAACTTCTCA
CAAGTCACAAAAAGAACCTCCTGGATATTCATTCCGCTCGAACTTTGACC
TCAGCCGGCAGATTGTCCAGGAC
UFO05630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sam-S-RE | 2387 | CG2674-RE | 269..1392 | 7..1123 | 5060 | 97.7 | Plus |
| Sam-S-RA | 2293 | CG2674-RA | 175..1298 | 7..1123 | 5060 | 97.7 | Plus |
| Sam-S-RI | 2429 | CG2674-RI | 311..1434 | 7..1123 | 5060 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 112687..113317 | 444..1067 | 2545 | 97.2 | Plus |
| 2L | 23513712 | 2L | 108684..108809 | 7..132 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 110754..110879 | 210..335 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 111906..112020 | 333..447 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 110404..110483 | 131..210 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:58:50 has no hits.
UFO05630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:17 Download gff for
UFO05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M(2)21AB-RH | 393..1521 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:29 Download gff for
UFO05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RI | 306..1434 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:16 Download gff for
UFO05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RI | 306..1434 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:16 Download gff for
UFO05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 108679..108809 | 1..132 | 98 | -> | Plus |
| 2L | 110406..110483 | 133..210 | 100 | -> | Plus |
| 2L | 110755..110877 | 211..333 | 100 | -> | Plus |
| 2L | 111907..112019 | 334..446 | 100 | -> | Plus |
| 2L | 112690..113370 | 447..1120 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:29 Download gff for
UFO05630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 108679..108809 | 1..132 | 98 | -> | Plus |
| arm_2L | 110406..110483 | 133..210 | 100 | -> | Plus |
| arm_2L | 110755..110877 | 211..333 | 100 | -> | Plus |
| arm_2L | 111907..112019 | 334..446 | 100 | -> | Plus |
| arm_2L | 112690..113370 | 447..1120 | 96 | | Plus |
