UFO05631.5prime Sequence
1089 bp (982 high quality bases) assembled on 2009-07-15
> UFO05631.5prime
CAGTCGACATGCTGGAACTTAAGCGTAGCCTGGACGCCAAGGGCCACTGC
CTGTTGGAGATGCCCTCGGGAACGGGCAAGACGGCCACGCTGCTCTCCCT
GATCGTTGCCTACATGGTGGAGCATCCGGAAACGGTGCGCAAGCTCATCT
ACTGCTCGCGTACTGTTCCGGAGATCGAGAAAGTGATCGCCGAGCTGCAG
AACCTGATGGTTTACTACGAGCGCCACTGCCCCAATCCACCACCCTTCAC
CGGTCTGGTGCTCAGCTCTAGGAAGAACATGTGCATCCATCCGGAGGTCA
GTAAGGAGCGCGAGGGCAAGGCCGTGGACGGTAAATGTTACGGACTCACT
GCCAGCTACATTCGCGAACGGCACGAGATGGACACCGAGACGCCCATTTG
CCAGTACTTTGAGGGATTTAGCCTGGAAGGCAAGGAGTCCACATTGCCGG
TCGGCGTCTACAGCATCGATGATCTTAAGGAATACGGTCGGTCGCGCAAC
TGGTGTCCCTACTTTTTGGCTCGCTATGCTATTGCCCATGCTCACATTGT
GGTATACAGTTACCACTATCTATTAGATCCGAAAATTGCCCAGGTGGTAT
CTAAGGAAATGAGCCGCGAGTCCTGTGTGGTCTTTGATGAGGCGCACAAC
ATCGACAACGTTTGCATCGATTCGATGAGTGTGAAGATCAACAGACGCAC
CGTGGAGCGAAGCACGAATGCTTTGAACCATCTAACTAAACTGGTTCAGA
CATTCGCGAAGAGGACACAAATCGTCTGAACGAGGAGTATCAGCGCATGG
TGCAGGTCTGAAGGATGCCAGTGTGCAGCGCGACACGGACATGATCCTGG
CCAATCCGGTCCTGCCAAACGATGTCCTAACCGAGTGTGCCCGGAAATAT
TAGAACGCCGATCATTTCCTTAGCTTTCTGCGTCGATTCATCGAGTATAT
AAAAGACAAGACTGCGCGTTCATCATGTCGTTCAGGAGTCACCTGGCGGC
TTCTTTAAGGATATTTTCCTCAAGATTTGTATAAGAGAAGCCTCTGCGTT
TTGTGTCTGAACGCCTGTCAGTCCTCCTGGCCGCTGGAA
UFO05631.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-RA | 2797 | CG9433-RA | 132..1200 | 7..1069 | 5000 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21171186..21171579 | 7..400 | 1970 | 100 | Plus |
| 2R | 25286936 | 2R | 21172104..21172427 | 751..1069 | 1130 | 94.2 | Plus |
| 2R | 25286936 | 2R | 21171824..21172042 | 531..749 | 1095 | 100 | Plus |
| 2R | 25286936 | 2R | 21171631..21171761 | 400..530 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:35 has no hits.
UFO05631.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:19 Download gff for
UFO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RB | 143..1223 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:20 Download gff for
UFO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 125..1205 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:27 Download gff for
UFO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 125..1205 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:27 Download gff for
UFO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21171179..21171578 | 1..399 | 99 | -> | Plus |
| 2R | 21171631..21171761 | 400..530 | 100 | -> | Plus |
| 2R | 21171824..21172044 | 531..750 | 99 | -> | Plus |
| 2R | 21172104..21172432 | 751..1073 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:20 Download gff for
UFO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17059136..17059266 | 400..530 | 100 | -> | Plus |
| arm_2R | 17058684..17059083 | 1..399 | 99 | -> | Plus |
| arm_2R | 17059329..17059549 | 531..750 | 99 | -> | Plus |
| arm_2R | 17059609..17059937 | 751..1073 | 95 | | Plus |
