UFO05633.5prime Sequence
1056 bp (954 high quality bases) assembled on 2009-07-15
> UFO05633.5prime
CAGTCGACATGGGCCTCGACTTCGACGCAGTGGAATACTGCAAAGGGGTG
AAGACCCAGCAGTCCCAGCCGCCTTTCGCCTGTCCCGTCCGCGGCTGCGA
CCGCAGCTACAAGACCATCATGGGTCTGCAATACCATCTTATGAAGTACG
ACCACGACAACCCACAGCCGCTCACGCCCGTGCTGACTCCGAGCCGCAAG
AAGGCGCGCTCACGCTCCGGCGGCCACCACTCCACGCCTCGTCCGCACAA
GGATCACCCCACGCCGGGTGGCGGTGGAGCTGAGGCCAGAAACGGCTGCT
CCTCGGCCAGCGCAGGCAGTGGATCGGCGAGCGGAGTCAGCGCCCGGCAG
TACGCCAATCCAGAGTCACTGGTGTCCTACAACGAGGAGGAGGCCACGGT
GACGTTTAACTTGGACGGGAAGAGCGTGCGCCTGGGCATCGACGACGCCT
TGCCGCTCGTAGAGGACGAAGAGTTCGCCGCCCTAGTGGCCAGGGGCTGT
ATTCTGAATGCCGACGCACCACCGCTGGAGGAGAACGCGCCCTGGGCAAG
GGTCCAGGTGCCCGTGGCCAGGGTGGCCGAGATTCCGGACTACCGAGTGT
CCGACGCCCCGCCACGGCCGCTGGCCTACTATCGCTTCATCGAAAAGTCC
CTGGAGGAGCTGGACGGGGAGGTGGAGTACGACGTTGACGAGGAGGACTC
CGCCTGGCTGGAGCACATGAACGAGGAGCGCCAGCGACTCGGCCTGAACG
CCGTGGGCATCGACACGATGGAGCTGCTGATGGACCGGCTGGAGAAGGAG
TCGCACTTCCAGGCGGCGGCCAACGGCACACCCACAGGCGTCGAGGTGAC
GACGACGCAGTCTGCTGCATTTGCCTCGACGGCGAGTGCCAAAACACAAC
GTGATACTTTCTGCGACATGTGCAACCTGCGTACACAGACTGCTACGGTG
TCCCTTTATCCCGGAGGGCAGTGCTGTGCCGCGATGCTTGCAGTCACCCA
GTTAGCCTGGTGACTGTGGTGCTCTGTCCAATGCGGCCGGCCATCAGCGA
CCGACC
UFO05633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Br140-RB | 5509 | CG1845-RB | 219..1263 | 8..1041 | 4785 | 98.1 | Plus |
| Br140-RA | 5251 | CG1845-RA | 219..1263 | 8..1041 | 4785 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7276852..7277883 | 1029..8 | 4500 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:33 has no hits.
UFO05633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:20 Download gff for
UFO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1845-RA | 182..1241 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:50 Download gff for
UFO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Br140-RA | 208..1267 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:14 Download gff for
UFO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Br140-RA | 208..1267 | 1..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:14 Download gff for
UFO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7276867..7277888 | 1..1014 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:50 Download gff for
UFO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3164372..3165393 | 1..1014 | 97 | | Minus |
