UFO05635.5prime Sequence
1084 bp (972 high quality bases) assembled on 2009-07-15
> UFO05635.5prime
CAGTCGACATGACAGCTCAAATTGAGATAATTCCATGCAAAGTCTGCGGC
GACAAGTCATCCGGCGTGCATTACGGAGTGATCACCTGCGAGGGCTGCAA
GGGATTCTTTCGAAGATCGCAGAGCTCCGTGGTCAACTACCAGTGTCCGC
GCAACAAGCAATGTGTGGTGGACCGTGTTAATCGCAACCGATGTCAATAT
TGTAGACTGCAAAAGTGCCTAAAACTGGGAATGAGCCGTGATGCTGTAAA
GTTCGGCAGGATGTCCAAGAAGCAGCGCGAGAAGGTCGAGGACGAGGTAC
GCTTCCATCGGGCCCAGATGCGGGCACAAAGCGACGCGGCACCGGATAGC
TCCGTATACGACACACAGACGCCCTCGAGCAGCGACCAGCTGCATCACAA
CAATTACAACAGCGGCGGCTACTCCAACAACGAGGTGGGCTACGGCAGTC
CCTACGGATACTCGGCCTCCGTGACGCCACAGCAGACCATGCAGTACGAC
ATCTCGGCGGACTACGTGGACAGCACCACCTACGAGCCGCGCAGTACAAT
AATCGATCCCGAATTTATTAGTCACGCGGATGGCGATATCAACGATGTGC
TGATCAAGACGCTGGCGGAGGCGCATGCCAACACAAATACCAAACTGGAA
GCTGTGCACGACATGTTCCGAAAGCAGCCGGATGTGTCGCGCATTCTCTA
CTACAAGAATCTGGGCCAAGAGGAACTCTGGCTGGACTGCGCCGAGAAGC
TTACACAAATGATACAGAACATAATCGAATTTGCTAAGCTCATACCGGGA
TTCATGCGCCTAAGTCAGGACGATCAGATATTACTGCTGAAGACGGGCTC
CTTTGAGCTGGCGATTGTCGCATGTCCAGACTGCTTGATCTCTCACAGAA
CGCGGTTCTCTACGGCGACGTGATGCTGCCCAGGAGGCGTTCTACACATC
CGACTCGGAAGAGATGCGTCTGGGTGTCCCGCATCTTTCAAACGGCAGGT
CGAATAGCGACTCAACTGACTGAACGAACTGGCGCTGTATCAAAGCTTAT
GCTGCTCTGCAAACGCATGGAGTGCGTGTATACC
UFO05635.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12912-RB | 6466 | CG12912-RB | 2577..3658 | 8..1078 | 5005 | 98.2 | Plus |
| Hr46-RE | 6385 | CG33183-RE | 2496..3577 | 8..1078 | 5005 | 98.2 | Plus |
| Hr46-RC | 6466 | CG33183-RC | 2577..3658 | 8..1078 | 5005 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10209880..10210111 | 243..12 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 10209440..10209609 | 412..243 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 10209101..10209268 | 576..409 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 10208706..10208853 | 827..680 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 10208475..10208646 | 996..826 | 685 | 97.1 | Minus |
| 2R | 25286936 | 2R | 10208920..10209025 | 681..576 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:13:06 has no hits.
UFO05635.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:14 Download gff for
UFO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RB | 85..1177 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:30 Download gff for
UFO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12912-RB | 2573..3665 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:32 Download gff for
UFO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RC | 2573..3665 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:32 Download gff for
UFO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10209880..10210111 | 12..243 | 100 | | Minus |
| 2R | 10209440..10209608 | 244..412 | 100 | <- | Minus |
| 2R | 10208401..10208644 | 828..1061 | 92 | <- | Minus |
| 2R | 10208706..10208852 | 681..827 | 100 | <- | Minus |
| 2R | 10208921..10209024 | 577..680 | 100 | <- | Minus |
| 2R | 10209101..10209264 | 413..576 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:30 Download gff for
UFO05635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6095906..6096149 | 828..1061 | 92 | <- | Minus |
| arm_2R | 6096211..6096357 | 681..827 | 100 | <- | Minus |
| arm_2R | 6096426..6096529 | 577..680 | 100 | <- | Minus |
| arm_2R | 6096606..6096769 | 413..576 | 100 | <- | Minus |
| arm_2R | 6096945..6097113 | 244..412 | 100 | <- | Minus |
| arm_2R | 6097385..6097616 | 12..243 | 100 | | Minus |
