UFO05641.5prime Sequence
1140 bp (1013 high quality bases) assembled on 2009-07-15
> UFO05641.5prime
CAGTCGACATGTTCAAAAACACTTTCCAATCGGGATTCCTATCAATTCTG
TACAGTATTGGCTCAAAGCCACTGCAGCTGTGGGATAAGAAGGTGCGCAA
TGGACACATCAAGCGGATCACCGACAACGACATACAAAGCCTCGTGTTGG
AAATAGTCGGCACCAATGTCAGCACCACGTTCATAACATGTCCGGCAGAT
CCGAAGAAGACGCTGGGCATCAAGCTGCCCTTCCTGGTGATGATCATCAA
GAACATGAAGAAGTACTTCACCTTCGAGGTTCAGGTTCTCGATGACAAGA
ACGTGCGGCGAAGGTTTAGGGCCAGTAACTACCAGTCGACAACTCGTGTC
AAGCCTTTCATTTGCACCATGCCCATGCGATTGGACGAGGGATGGAACCA
GATCCAGTTCAACCTGTCCGACTTCACGCGTCGCGCATACGGCACCAATT
ATGTGGAGACACTCCGTGTACAGATTCATGCAAATTGCCGCATCAGACGC
GTCTACTTCTCCGATCGTCTCTACTCGGAGGACGAGCTGCCGCCGGAGTT
TAAGCTCTTCCTTCCCATTCAGAAGCCGGTGCAGAAGTCCAATGCGATTT
GTAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGAAGCCATCACAAACGGCATGATGAACCTGAATCGCAGCGGCATCAGCA
CTTGTCGCTTGCGTATATATTTGCCCATGTGAAACGGGGGGCGAGAGTTG
TCCATATTGGCCACGTTTAATCAACTGGTGAAACCCCACCCAGGGATGCT
GAACGAAAAACATATTCTCAATAATCCGTAGAAATAGCAGTTTCACCGTA
CACCGCCCAATTGCAAAATTGGTTAACTGCCGGAATCGTC
UFO05641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bug22-RA | 943 | CG5343-RA | 201..801 | 5..605 | 2990 | 99.8 | Plus |
| CG17118-RA | 979 | CG17118-RA | 425..496 | 389..460 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10430062..10430386 | 605..281 | 1625 | 100 | Minus |
| 2L | 23513712 | 2L | 10430437..10430718 | 286..5 | 1395 | 99.6 | Minus |
| 2L | 23513712 | 2L | 10730802..10730873 | 389..460 | 225 | 87.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:11 has no hits.
UFO05641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:27 Download gff for
UFO05641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5343-RA | 191..803 | 1..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:06 Download gff for
UFO05641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5343-RA | 195..807 | 1..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:53 Download gff for
UFO05641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bug22-RA | 195..807 | 1..613 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:53 Download gff for
UFO05641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10430056..10430382 | 285..613 | 98 | <- | Minus |
| 2L | 10430439..10430720 | 1..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:06 Download gff for
UFO05641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10430056..10430382 | 285..613 | 98 | <- | Minus |
| arm_2L | 10430439..10430720 | 1..284 | 98 | | Minus |
