UFO05643.5prime Sequence
1053 bp (941 high quality bases) assembled on 2009-07-15
> UFO05643.5prime
CAGTCGACATGGGACTAACAATATCTAGTCTTTTGACACGTTTGTTTGGA
AAAAAACAAATGCGTATTCTTATGGTTGGCTTGGATGCTGCTGGAAAAAC
GACTATTCTGTACAAATTAAAGCTGGGTGAAATTGTAACCACCATACCAA
CCATAGGCTTCAATGTCGAGACTGTGGAATATAAGAATATATGTTTTACC
GTTTGGGATGTTGGTGGCCAAGACAAAATTCGCCCGTTGTGGCGACACTA
TTTCCAAAATACACAGGGTCTTATATTTGTAGTGGATTCCAACGACCGCG
ATCGTATAACTGAAGCTGAAAGAGAACTACAGAACATGCTCCAGGAGGAT
GAACTTAGGGACGCGGTACTTTTGGTTTTTGCCAACAAACAGGACCTACC
GAATGCAATGACAGCTGCCGAGCTTACGGACAAGTTGCGCCTTAACCAAT
TAAGGAATCGCCACTGGTTTATTCAGTCTACATGTGCTACCCAAGGGCAC
GGTCTTTATGAAGGACTTGATTGGCTATCAGCTGAATTGGCTAAAAAAGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGTATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGATCTGATCGCAGCGCATCAGCATCTGTCGTC
TGCGTATATATTTGCCATGTGAAACGGGGCGAAGAGTGTCATATGCACGT
TAAATCAAACTGTGAACTCACCAGGATGCTGAAACGAAAACATATTTCTC
ATTATCGTTAGAATAGCAGTTCACCGTAACGCCAATCTGCATAATTGTGT
AAA
UFO05643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf102F-RB | 718 | CG11027-RB | 97..638 | 7..548 | 2710 | 100 | Plus |
| Arf102F-RA | 930 | CG11027-RA | 97..638 | 7..548 | 2710 | 100 | Plus |
| Arf79F-RJ | 1464 | CG8385-RJ | 405..767 | 72..434 | 525 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1124435..1124698 | 75..338 | 1320 | 100 | Plus |
| 4 | 1348131 | 4 | 1124767..1124893 | 338..464 | 635 | 100 | Plus |
| 4 | 1348131 | 4 | 1124950..1125033 | 465..548 | 420 | 100 | Plus |
| 4 | 1348131 | 4 | 1124263..1124331 | 7..75 | 345 | 100 | Plus |
| 3L | 28110227 | 3L | 22869666..22869777 | 265..154 | 305 | 84.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:10:32 has no hits.
UFO05643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:29 Download gff for
UFO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf102F-RA | 84..634 | 1..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:50 Download gff for
UFO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf102F-RA | 91..641 | 1..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:13 Download gff for
UFO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf102F-RA | 91..641 | 1..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:13 Download gff for
UFO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1124257..1124331 | 1..75 | 94 | -> | Plus |
| 4 | 1124436..1124698 | 76..338 | 100 | -> | Plus |
| 4 | 1124768..1124893 | 339..464 | 100 | -> | Plus |
| 4 | 1124950..1125036 | 465..552 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:50 Download gff for
UFO05643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1144883..1144957 | 1..75 | 94 | -> | Plus |
| arm_4 | 1145062..1145324 | 76..338 | 100 | -> | Plus |
| arm_4 | 1145394..1145519 | 339..464 | 100 | -> | Plus |
| arm_4 | 1145576..1145662 | 465..552 | 97 | == | Plus |
