UFO05644.5prime Sequence
1066 bp (946 high quality bases) assembled on 2009-07-15
> UFO05644.5prime
CAGTCGACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGATTGCCAGCAAG
CGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATCGAGGCCATCAT
TGCCGAGAAGTTCCCCGCCGGCCAGTCCTACGAGGATGTGCTCAAGGACG
GTCAGGTGCTGTGCAAACTGATCAACGTGCTGTCGCCCAATGCCGTGCCC
AAGGTCAACTCCTCGGGCGGCCAGTTCAAGTTCATGGAGAACATCAACAA
CTTCCAGAAGGCCCTGAAGGAGTACGGTGTGCCCGACATCGATGTCTTCC
AGACCGTCGATCTGTACGAGAAGAAGGATATTGCCAACGTTACCAACACC
ATCTTCGCTTTGGGCCGTGCCACCTACAAGCATGCCGACTTCAAGGGTCC
CTTCCTGGGCCCCAAGCCCGCCGATGAGTGCAAGCGCGATTTCACCGAAG
AGCAGCTGAAGGCTGGCCAGACCATTGTGGGTCTGCAGGCCGGTTCCAAC
AAGGGAGCCACCCAGGCTGGCCAGAACCTCGGCGCTGGCCGCAAGATCCT
GCTCGGCAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGATCTGATCGCAGCGCATCAG
CACTGTCGCTGCGTATATATTTGCCATGTGAACGGGGCGAGAGTGTCATA
TGCCACGTTTAATCAACTGTGACTCACCCAGGATGCTGAAACGAAAAACT
ATTCCATACCTTAAGAATAGCAGGTTCACGTAACGCCATTGCAATAATTG
GTGACTGCGATCGTCT
UFO05644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp20-RC | 693 | CG4696-RC | 72..626 | 7..561 | 2775 | 100 | Plus |
| Mp20-RA | 879 | CG4696-RA | 72..625 | 7..560 | 2770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13246915..13247249 | 37..371 | 1675 | 100 | Plus |
| 2R | 25286936 | 2R | 13247317..13247505 | 372..560 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:16 has no hits.
UFO05644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:30 Download gff for
UFO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RA | 83..648 | 1..566 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:24 Download gff for
UFO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RA | 65..630 | 1..566 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:12 Download gff for
UFO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RC | 65..631 | 1..568 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:12 Download gff for
UFO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13246917..13247249 | 39..371 | 100 | -> | Plus |
| 2R | 13247317..13247510 | 372..566 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:24 Download gff for
UFO05644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9134422..9134754 | 39..371 | 100 | -> | Plus |
| arm_2R | 9134822..9135015 | 372..566 | 98 | == | Plus |
