UFO05645.5prime Sequence
1028 bp (908 high quality bases) assembled on 2009-07-15
> UFO05645.5prime
CAGTCGACATGTCGAAGATCGGAATTAACGGATTTGGCCGCATCGGCCGC
TTGGTGCTCCGCGCCGCCATCGATAAGGGCGCCTCCGTGGTGGCCGTCAA
CGATCCCTTCATCGATGTCAACTACATGGTTTACCTGTTTAAATTCGACT
CGACTCACGGTCGTTTCAAGGGCACCGTTGCGGCTGAGGGCGGATTCCTG
GTGGTGAACGGCCAGAAGATCACCGTGTTCAGCGAGCGCGACCCGGCCAA
CATCAACTGGGCCAGTGCTGGAGCCGAGTATGTGGTGGAGTCCACCGGAG
TGTTCACCACCATTGACAAGGCGTCCACCCACTTGAAGGGCGGCGCCAAG
AAGGTCATCATCTCGGCCCCATCCGCCGATGCGCCCATGTTCGTGTGCGG
CGTTAACCTGGACGCCTACAGCCCCGACATGAAGGTGGTCTCCAACGCCT
CGTGCACCACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCAATGACAAC
TTCGAGATCGTCGAGGGTCTGATGACCACCGTGCACGCCACCACTGCCAC
CCAGAAGACCGTCGACGGTCCCTCTGGCAAACTGTGGCGCGATGGACGTG
GCGCCGCCCAGAACATCATCCCGGCCGCCACCGGAGCCGCCAAGGCTGTG
GGCAAGGTCATCCCCGCCCTGAACGGCAAGCTGACCGGCATGGCTTTCCG
CGTGCCCACGCCCAATGTCTCCGTTGTGGATCTTACCGTCCGCTTGGGCA
AGGAGCCACCTATGACGAAATCAAGCTAATGTCGAGGAGCCTCCAAGGGA
CCCCTGAAGGAATCCTGGCTACACGATGAGAGTGGTCTCACGACTTCTTC
AGCGACACCATTCGTCTGTGTCGACGCAGCTGCATTTCGCTGACGATAGT
CGTCAGCTATCTCGTGTACGACACGAGTCGTACTCACGCGTCATCGACTG
ATCAGTATATGCGGGCAGACGCAGCTTCTGAACATCGTGGCCGCGGCCAG
TAATGGCTATCTATCTATCCTATCTAAT
UFO05645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gapdh1-RB | 1330 | CG12055-RB | 110..1095 | 8..962 | 4170 | 96.8 | Plus |
| Gapdh1-RA | 1480 | CG12055-RA | 260..1245 | 8..962 | 4170 | 96.8 | Plus |
| Gapdh2-RC | 1377 | CG8893-RC | 51..925 | 8..871 | 2570 | 87.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7792316..7793121 | 810..8 | 3865 | 99.5 | Minus |
| X | 23542271 | X | 15868335..15869080 | 8..753 | 2485 | 88.9 | Plus |
| 2R | 25286936 | 2R | 16959364..16959756 | 737..345 | 405 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:14 has no hits.
UFO05645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:31 Download gff for
UFO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gapdh1-RB | 58..991 | 1..916 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:09 Download gff for
UFO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gapdh1-RA | 256..1189 | 1..916 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:54 Download gff for
UFO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gapdh1-RA | 256..1189 | 1..916 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:54 Download gff for
UFO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7792192..7793125 | 1..916 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:09 Download gff for
UFO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3679697..3680630 | 1..916 | 97 | | Minus |
