UFO05646.5prime Sequence
1019 bp (926 high quality bases) assembled on 2009-07-15
> UFO05646.5prime
CAGTCGACATGCAGGTTAAGTGCCTGATCGTCTGTCTCGCTTTGGGGCTA
TTAATGCTGGCCACGCCCGTTTGCGAAGCGCGCCGAGGGCGTGGACGTGG
ACGAACCAAGTCCAGGGTGCAGATCGGATTGCCAATTACCGGAAAATATC
GCGATCCGGAGTCCGATCAGTACTACAATAATAATAATGGCGCCAAAATC
CTACAAGCCTCGCACTTCGATCTTGAGTACGTTCTGGGCCACAAGATCGC
CTTTTTGTGCGTGGCCAAGGGCAATCCCCGACCCCATATCACCTGGTACA
AGGACGGAGCGGAGATCTATCAGCACCTCTATATGCACGTACACGAATGG
CGCATCGGCGACGACAAGGTCAAGTCGAAGATCGAAATTGACCCTGCCAC
ACAGATGGACGCTGGACTCTACGAATGCACCGCCGACAACATGTACTCCA
TCGATCGGCGCAGTTTTAAGACGGATTTCTCCATTGCCTTCGACGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGAACCTGATCGCAGCGGCATCAGCACTTGTCGCTTG
CGTATATATTTGCCATGTGAAACGGGGCGAGAGTGTCATATGACACGTTT
AAATCAAACTGTGAACTCACCAGGATGCTGAACGAAAACATATCTCATTA
TCATAAGATAGCAGTTCACGTACCGCCATCTGCCAATATATGTGTAGAAC
TGCGATCGTCTGAATCATT
UFO05646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 755 | CG14141-RA | 112..598 | 8..494 | 2435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11201696..11202001 | 189..494 | 1530 | 100 | Plus |
| 3L | 28110227 | 3L | 11201462..11201643 | 8..189 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:41 has no hits.
UFO05646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:22 Download gff for
UFO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 151..643 | 1..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:23 Download gff for
UFO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 106..598 | 1..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:31 Download gff for
UFO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 106..598 | 1..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:31 Download gff for
UFO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11201456..11201642 | 1..188 | 97 | -> | Plus |
| 3L | 11201696..11202001 | 189..494 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:23 Download gff for
UFO05646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11194556..11194742 | 1..188 | 97 | -> | Plus |
| arm_3L | 11194796..11195101 | 189..494 | 100 | == | Plus |
