UFO05647.5prime Sequence
1033 bp (911 high quality bases) assembled on 2009-07-15
> UFO05647.5prime
CAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGTCAATAACG
GAGGAAACACAAGTGACGCGCAAGGAATGTGGAAAAAGGGGACGAAAACC
AGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAAACTAGAAC
GCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGCTGCGGTAT
CAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTAGTTGCTTT
GCGTACGGAACTGGAGCGCTTAATTCAATGGAATAACCAGTTGAGCGAAA
GCAACACTCCAACCAACAATGACCAGTTACTTCAGGAACTCGGAATCCTC
AAACAAGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGCTGAGACGAAAAACATATCTCAATAAACCCTTTAGGA
AATAGCCAGGTTTCACCGTAACACGCACATCTGCGAATATATGTGTAGAA
CTGCGAAATCGTCTGTATCACCTCCAGAGCGATGAAACGTTCAGTTGCCT
CATGAAACGGTGTAACAGTGAACACTATCCCATATCACCAGCTCACCGTC
TTCATGCAACGAATCGATGAACATTCATCAGCG
UFO05647.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18619-RB | 627 | CG18619-RB | 84..434 | 9..359 | 1755 | 100 | Plus |
| CG18619-RA | 512 | CG18619-RA | 84..437 | 9..359 | 1715 | 99.2 | Plus |
| CG18619-RC | 516 | CG18619-RC | 84..438 | 9..359 | 1705 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10264762..10264885 | 146..269 | 620 | 100 | Plus |
| 2L | 23513712 | 2L | 10264947..10265036 | 270..359 | 450 | 100 | Plus |
| 2L | 23513712 | 2L | 10264551..10264633 | 65..147 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 10264208..10264264 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:37 has no hits.
UFO05647.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:23 Download gff for
UFO05647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18619-RB | 78..434 | 9..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:44 Download gff for
UFO05647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18619-RB | 84..440 | 9..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:10 Download gff for
UFO05647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18619-RB | 84..440 | 9..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:10 Download gff for
UFO05647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10264552..10264633 | 66..147 | 100 | -> | Plus |
| 2L | 10264764..10264885 | 148..269 | 100 | -> | Plus |
| 2L | 10264947..10265036 | 270..359 | 100 | == | Plus |
| 2L | 10264208..10264264 | 9..65 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:44 Download gff for
UFO05647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10264552..10264633 | 66..147 | 100 | -> | Plus |
| arm_2L | 10264764..10264885 | 148..269 | 100 | -> | Plus |
| arm_2L | 10264947..10265036 | 270..359 | 100 | == | Plus |
| arm_2L | 10264208..10264264 | 9..65 | 100 | -> | Plus |
