UFO05648.5prime Sequence
1061 bp (914 high quality bases) assembled on 2009-07-15
> UFO05648.5prime
CAGTCGACATGGCTGCCTCGCGATCACGGCGCAACAATGCCGGCAACAAA
ATAGCTCATTTGCTCAATGAGGAAGAGGAGGACGACTTTTACAAAACGTC
CTATGGTGGATTTCAGGAAGACGAAGAGGATAAGGAATACGAGCAAAAAG
ACGAAGAGGAAGATGTGGTTGACTCCGACTTCAGTATCGATGAGAACGAC
GAGCCCGTTTCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGGAAACGCGG
TGTCGTTAACACAAAGGCTTATAAGGAAACCAAGCCTGCAGTCAAAAAGG
AAACAAAGGCAACGCCGGCCCTGCACAAGAAACGACCTGGTGGTGGGGTA
ACGAAACGGCGGCCACGTCCACGCTTCACGGTCCTCGATTCCGGCCGCAA
ATCCATACGCACTTCCACGGCCATCAAGACACAGGCTACCAAAATACGCC
TCAAAGAGTTGGACGATGCCCGCAAGCGCAAAAAGAAGAAGGTGCGCGTG
GAGGACTACATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCCAAAATAAC
CGAGGAAGAAACACTAAATCTTTGGAGAAATTCCAGAAAATGGAGCTGGA
GAAGAAGAAATCACGTCCCACCAAGCGCACGTTCTCCGGACCCACGATAC
GCTACCACTCACTAACCATGCCAGCGATGCGAAAGCCCACTCGCGGAGCA
AACCCTGCGGTCGATTCAAAGGATCTTGCTGGGAAGTGCGAACGCACATT
CGTTACAATCGAGAACGATTTCAATGACATGGTGTTTCAAGCCTCTTCCG
CCACAAGGCGCCTCCCAAGCCAGCAATGGCATCTGTCCAATCACCAGGCT
GCCAGCCCGTTACTTTGACCCGATCACACAGCAGCCATACTACAGCATCA
GGCTTCAAAATTCTGCGCGAGCTACTACATGCAGCTGGAACAGCAGGCGG
CGGCAGCGGAGCACCCGACTGCAAATGCTGATGGCGCCAGCTGTCAGGAA
ATCGTCTGAGCTTCGGCAGCTGCAGCAAACCGGAAATAACGCCAGCTTCT
AGAACATTCGT
UFO05648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| YL-1-RB | 1456 | CG4621-RB | 112..1164 | 9..1040 | 4650 | 97.3 | Plus |
| YL-1-RA | 1233 | CG4621-RA | 112..1164 | 9..1040 | 4650 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10971316..10971706 | 575..958 | 1615 | 97.2 | Plus |
| 2L | 23513712 | 2L | 10970955..10971257 | 274..575 | 1465 | 99.7 | Plus |
| 2L | 23513712 | 2L | 10970748..10970881 | 143..276 | 670 | 100 | Plus |
| 2L | 23513712 | 2L | 10970554..10970688 | 9..143 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:32:28 has no hits.
UFO05648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:24 Download gff for
UFO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| YL-1-RA | 100..1043 | 9..945 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:24 Download gff for
UFO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| YL-1-RA | 112..1055 | 9..945 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:46 Download gff for
UFO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| YL-1-RA | 112..1055 | 9..945 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:46 Download gff for
UFO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10970554..10970687 | 9..142 | 99 | -> | Plus |
| 2L | 10970748..10970880 | 143..275 | 100 | -> | Plus |
| 2L | 10970957..10971257 | 276..575 | 99 | -> | Plus |
| 2L | 10971317..10971692 | 576..945 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:24 Download gff for
UFO05648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10970748..10970880 | 143..275 | 100 | -> | Plus |
| arm_2L | 10970554..10970687 | 9..142 | 99 | -> | Plus |
| arm_2L | 10970957..10971257 | 276..575 | 99 | -> | Plus |
| arm_2L | 10971317..10971692 | 576..945 | 98 | == | Plus |
