UFO05650.5prime Sequence
1012 bp (857 high quality bases) assembled on 2009-07-15
> UFO05650.5prime
CAGTCGACATGATTTGTCGCCTTTGCCTGCGATGTCTTAGTCCCGGAAGC
GCTGTCTTCCTCTTTGAGACGGACGATACGCTTGCGGAGACGCGCCTGGT
CAAGATGATTGCGAAGTTTCTGCAGCTGGAGATCCTACCAGACGACGGCA
TCTCGACCAGCGTCTGTACCGAGTGCTGTGAGCATCTGGAGGACTTCAAT
GGCTTCTGGCAGCTGGTGGAGCAGAAGCAGTGCTCACTCAAGAAGGAGTT
CCTTACCGTGGACGTCGACTGTGCGGCCATGAAGTGGACGGGCGGTGTGG
ACGTGGACGTCAACATCGACGAACTGCCGCTGGCGGCTGGCGACATGGAC
GAGAAACCGTTGGACCTGCACAACCTTAGTCTGCTGGGAAGCGTGCTGGA
CGTGAATGTGGACAGTGTGGAAGTCAGGGAACCGATCAAGGAGCAGCTGC
CCTGCGAGGAGGAGGAGGACGAGAAGCCCTGCCTGCAAGCTAGTGATAGC
GAACCGGAGGTGACCGAGGGGCAGCCGGAATCTGAATCTGACTCCTCAGA
TGATGAACCCCTGGTCCGTCTGAAATCGAAAATGAAGCCCAAGCGCAAAA
CCTCGGCACGTTCCTCCAAGGATCAGGGTCCGATATCGCTGCAGCAGAGC
TTGCAGATCTGCTCGACGATGGTGGCAAGCGTCGGCGCAGGAAGGCACCT
GACCAGCGAACAACCACCGAGTCGCAGAGTCCGAGCTACAGGCCGTTCTC
GAGCGCAAGCCCAAGGGCTGCTCCCGTGCTCAGCTGGCAGAGCTACGAGA
GGCCATTGCTAGCTACATGAGTGCAGCTGCGACTGTGCGATTTAGTGCTC
CTACTATCGATGAGACCACTGCTGAGTGCACAGCGCGAGTACTACTCAGT
GCTGCGCAAGTCTTACCCGCGCTCAGCTGATGACCATCGCAACTATCACC
CAGCTATTAACTGCACATGCAGAGTCGCTCACTCGCAGACTACTGGCCAC
TCTATCGGACCG
UFO05650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2889-RB | 2098 | CG2889-RB | 299..1347 | 5..1007 | 4095 | 95.2 | Plus |
| CG2889-RA | 2173 | CG2889-RA | 374..1422 | 5..1007 | 4095 | 95.2 | Plus |
| CG12219-RA | 2018 | CG12219-RA | 261..350 | 141..230 | 180 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10475200..10475622 | 130..552 | 2115 | 100 | Plus |
| X | 23542271 | X | 10475680..10475958 | 552..825 | 1180 | 98.2 | Plus |
| X | 23542271 | X | 10475014..10475140 | 5..131 | 620 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:48 has no hits.
UFO05650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:36 Download gff for
UFO05650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 372..1199 | 1..825 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:54 Download gff for
UFO05650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 372..1199 | 1..825 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:16 Download gff for
UFO05650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 372..1199 | 1..825 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:16 Download gff for
UFO05650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10475012..10475140 | 1..131 | 97 | -> | Plus |
| X | 10475202..10475622 | 132..552 | 100 | -> | Plus |
| X | 10475681..10475958 | 553..825 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:54 Download gff for
UFO05650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10369045..10369173 | 1..131 | 97 | -> | Plus |
| arm_X | 10369235..10369655 | 132..552 | 100 | -> | Plus |
| arm_X | 10369714..10369991 | 553..825 | 98 | == | Plus |
