UFO05652.5prime Sequence
1045 bp (907 high quality bases) assembled on 2009-07-15
> UFO05652.5prime
CAGTCGACATGCAGCCGGTTCGATTCGGATCTCCTTGGATTATGGCCATT
GGGCTGGTGCTACTACTGCTGGCATTCGTCTCCGCCGGAAAGTCGCGTCA
GCGTTCGCCAGCCAATTGCCCCACCATCAAGCTGAAGCGTCAGTGGGGCG
GCAAGCCTTCGTTGGGACTCCACTACCAAGTGCGTCCCATCCGCTATGTG
GTCATCCATCACACGGTCACCGGCGAGTGCAGCGGACTGCTCAAGTGCGC
CGAGATTCTCCAGAACATGCAGGCGTATCATCAGAACGAGCTGGACTTCA
ACGATATTAGTTACAACTTCCTGATCGGCAACGATGGTATCGTATACGAA
GGCACTGGTTGGGGATTGCGCGGTGCCCACACCTATGGATACAATGCCAT
TGGCACGGGCATAGCCTTTATCGGCAACTTTGTGGATAAACTTCCATCGG
ATGCGGCTCTCCAGGCGGCCAAAGATCTGCTGGCCTGCGGAGTGCAGCAG
GGTGAGCTGAGCGAGGATTACGCCCTGATCGCCGGCTCCCAGGTGATCAG
CACCCAGAGTCCCGGACTGACTCTATACAACGAGATCCAAGAGTGGCCGC
ACTGGCTCTCAAATCCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCACAGGAGTCCAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTAGCATTCT
GCGACATGCAGCATCACAAACGGCATGATGACTGATCGCCAGCGCATCAG
CACCTGTCGCTGCTATAATTTGCCATGGGTGAACGGGGGGAAGAGTGTCA
ATGCCCGTCATCAAACTGGTGACTCCCAGGATGCCTGAACGAAAA
UFO05652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SA-RB | 726 | CG11709-RB | 38..647 | 8..617 | 3050 | 100 | Plus |
| PGRP-SA-RA | 1018 | CG11709-RA | 330..939 | 8..617 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11561972..11562280 | 8..316 | 1545 | 100 | Plus |
| X | 23542271 | X | 11562518..11562700 | 435..617 | 915 | 100 | Plus |
| X | 23542271 | X | 11562339..11562461 | 317..439 | 600 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:41:18 has no hits.
UFO05652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:37 Download gff for
UFO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SA-RA | 438..1056 | 1..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:45 Download gff for
UFO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SA-RA | 324..942 | 1..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:01 Download gff for
UFO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SA-RA | 324..942 | 1..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:01 Download gff for
UFO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11561966..11562280 | 1..316 | 98 | -> | Plus |
| X | 11562339..11562457 | 317..435 | 100 | -> | Plus |
| X | 11562519..11562703 | 436..621 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:45 Download gff for
UFO05652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11455999..11456313 | 1..316 | 98 | -> | Plus |
| arm_X | 11456372..11456490 | 317..435 | 100 | -> | Plus |
| arm_X | 11456552..11456736 | 436..621 | 98 | == | Plus |
