UFO05653.5prime Sequence
1117 bp (1001 high quality bases) assembled on 2009-07-15
> UFO05653.5prime
CAGTCGACATGTTCAACACCAGTGCACAGAATTGGTTCGGCATGGGCCAG
ACAGCCGTGGATCCGAGCGGCGGAGTGGCCCAGTTGCTCAACAACAATTC
GAGTCTCTACAATCAGCAGCAGCAGCAGGCGGCGGCGGCGCAACATTCCT
TCATGCGCCAGCGATCGCTGACCAGCTCCAATCCCGTCCTGGGGCGTTCA
AACGCCTTGGCCACGCGGCCCCAGTCGCCGCCCAACGTCCAGGTTGAGTA
CGAGGTGGCGGTACCCTTCGTTCCCACCTACCGGCACACTCCATACCACT
CGCTCTGGGATCTGCACCAATGCTCTTCCACACCTCCGACAAGCCTGTCG
CACATGGCCCGGATGATGGACTCCCTGATCCTCGACTCGCTATCCCCATT
TGGCTTCACGAAGATCACGGCCACCAGTCGACCTTCCCGGAACGCCAGCT
TGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGACAGCAGAGCGCCACCGG
CCCGTCAACAACCTGGGCTCTAATGCACCTGGGGGATTGGGCATTGGCGG
AAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCCACGCAAGAAGTGGCAC
CACAACCGCGAGCCAGTCAGACGGCCCAAATGCCATTTCCGTCGCAGCAG
CAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGCGGGATCCCGAGCTGCA
GCCCACTTTACCCTCCATCAACAGCAATGCGAACAGCAGCAGCCTCAGCC
AGAGCCACCACGGAAGTGCTGGGAACGTGGGGATTGGCGGGCGCAGGAGC
ACCTACACCCGCCGCCAGCATGGGCACAATGCGCCTGGGGCGACCAGCAA
GGCATCCGCCATGACCGCCGCCTTGCGGAAGAGCCGATCCGTGGAGCGCC
TGCGGCCAGGAAGCTCAGCACAACACCCAGCTTAACTTGAGCACAGCCGG
TAAGAAGAACTCGCTGGACGAAAACTCCAACTCGGATGACCAGAACGCCA
CCACATCCCTGGAAAACACTCGCACGCCCAAGTCCCTAGCCACCAGCACA
ACCCGCCAATGCTCCACCGAAGACAAGGCAAGCACCTCTCGCCTGACTAC
AGAGTCATCTGTGGAAC
UFO05653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat-60L1-RC | 2338 | CG1193-RC | 112..1206 | 8..1093 | 5050 | 98.2 | Plus |
| kat-60L1-RB | 2467 | CG1193-RB | 112..1206 | 8..1093 | 5050 | 98.2 | Plus |
| kat-60L1-RG | 2479 | CG1193-RG | 112..1218 | 8..1093 | 4920 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5785440..5785902 | 590..1047 | 1830 | 97.4 | Plus |
| 3R | 32079331 | 3R | 5783216..5783530 | 8..322 | 1575 | 100 | Plus |
| 3R | 32079331 | 3R | 5785112..5785381 | 322..591 | 1350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3321 | 681..761 | 120 | 64.2 | Plus |
UFO05653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:47 Download gff for
UFO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1193-RB | 106..1198 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:39 Download gff for
UFO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RB | 106..1198 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:01 Download gff for
UFO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RB | 106..1198 | 1..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:01 Download gff for
UFO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5783210..5783530 | 1..322 | 99 | -> | Plus |
| 3R | 5785113..5785381 | 323..591 | 100 | -> | Plus |
| 3R | 5785442..5785944 | 592..1085 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:39 Download gff for
UFO05653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1608932..1609252 | 1..322 | 99 | -> | Plus |
| arm_3R | 1610835..1611103 | 323..591 | 100 | -> | Plus |
| arm_3R | 1611164..1611666 | 592..1085 | 96 | | Plus |
