UFO05658.5prime Sequence
1047 bp (934 high quality bases) assembled on 2009-07-15
> UFO05658.5prime
CAGTCGACATGTCTCGTAACAAAGACAAATACGACAGCGCCAATCGGCGG
CAGCAGATCTTTCTGTCGCAGGAGGACATAGCTGCGGGCAAGAAGACGAA
CTGGAGTGGCCTAGAGATTACTGGCTGCGTCCGCAATATCAGCCCGTCGC
TGTGGGAATTTGAGCATCTAACCGCCCTCTACCTGAACGACAACCAGCTG
CTGCGATTGCCCGCAGACGTTGGCATGCTGACCAGCCTCCGAACTTTGGA
CCTGTCCAGCAATAAGCTAAGAAGTCTTCCCGCAGAGCTCGGCGAGCTCA
TCCAGTTGCGGGAGCTGTTGCTGAACAACAACTTTCTGCGCGTACTGCCT
TACGAGATCGGCAAGCTGTTCCACCTCGTCATACTCGGCCTCATGGGCAA
TCCGCTGCAAAAGGAGTTCATGAACATCTACAACGAACCGAACGGCACGC
AGAAACTGCTCACCTACATGCTGGACAACTTGTCATTTACCGTGAATCCA
CCGCCCCAGAGGCCCTGGCTGCCACTGGCCAAGCCCAACAAAACGCGACC
AGCCTGCATTTTTACGGTCATGTGCTATAATGTGCTCTGCGACAAGTACG
CGACGCGACAAATGTACGGATACTGTCCGTCGTGGGCGCTATGCTGGGAG
TACCGAAAAAAGTCGATTATCGACGAGATACGGCACTATGCAGCGGACAT
TATCAGTCTGCAGGAGATCGAAACGGAGCAATTCTATCACTTCTTCCTGC
CGGACTCAAGAACGATGGGTACGAGGGAATCTTCTCACCGAAGTCGCGTG
CTAAGACTATGTCCGAGCTGGAGAGGAGTACGTCGATGGCTGTGCGATAT
TCTTCAGGCGTCCAGTTTACGCTGATCAGATCATTGATCGAGTTCATCAG
CTGCATGACATGCCGAGGGCTCCGACACATGCTGACGCGTATGCTAGATA
CATCGTCTGCCGCACTGCTCAGGTGAAGAACGCATGGGAGCCGATGTCGA
GTACCAATTCTCGCAGCGCTGTCTGTCTGGCGGGCCCATAACTGGAC
UFO05658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 208..1223 | 9..998 | 4475 | 97.3 | Plus |
| twin-RC | 2586 | CG31137-RC | 104..1119 | 9..998 | 4475 | 97.3 | Plus |
| twin-RE | 3548 | CG31137-RE | 368..1383 | 9..998 | 4475 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24199283..24199587 | 858..556 | 1425 | 99.3 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 311..118 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 486..310 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220329 | 124..9 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 556..487 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:11 has no hits.
UFO05658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:33 Download gff for
UFO05658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..1387 | 9..1001 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:06 Download gff for
UFO05658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..1387 | 9..1001 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:35 Download gff for
UFO05658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..1387 | 9..1001 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:35 Download gff for
UFO05658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24219600..24219775 | 311..486 | 100 | <- | Minus |
| 3R | 24199275..24199587 | 556..864 | 98 | <- | Minus |
| 3R | 24199883..24199951 | 487..555 | 100 | <- | Minus |
| 3R | 24219965..24220151 | 124..310 | 100 | <- | Minus |
| 3R | 24220215..24220329 | 9..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:06 Download gff for
UFO05658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20024997..20025309 | 556..864 | 98 | <- | Minus |
| arm_3R | 20025605..20025673 | 487..555 | 100 | <- | Minus |
| arm_3R | 20045322..20045497 | 311..486 | 100 | <- | Minus |
| arm_3R | 20045687..20045873 | 124..310 | 100 | <- | Minus |
| arm_3R | 20045937..20046051 | 9..123 | 100 | | Minus |
