UFO05659.5prime Sequence
744 bp (48 high quality bases) assembled on 2009-07-15
> UFO05659.5prime
CAATCCACATGTGTCAATCCGGCGGCCAGATGCTGTGCGAGATCAAGAAC
ATGGCTCTTTCGGGCGATCCGGAGCTAGATGGCGAGATCCGCAAGTGGAT
TCGATGGGACAAATGCGCTAGCACCGCCTGCCAAATCATGGACGCACTTC
GGGCGAAAGACTGGGACACGCTGCGCAAGAGACTGTGCACCCTCTTCACC
TTCGGCACGGCCGGATTGAGGGCTTGCATGCAGGCTGGCTTTGACTCCAT
GAACGACCTGGTGGTGATTCAAACGGCGCAGGGCTTATGTGAGTACATAA
AGGAACAATACCCTGATCCGGCGGACTGGTCCGGACGTGGCATTGTCTTC
GGGTATGACGGTCGTTACAATAGCCACCGCTTCGCCGAGCTCTCGGCCAT
TGTGTTCCTAAACAACGACTTTAAGGTGTGGTTGTTCAAACGCTACGTGG
CCACACCCATGGTGCCCTTTGCCGTCTTGAGGCTACAGTGCTTGGCCGGC
GTCATGGTGACCGCCTCGCACAATCCCAAGGAGGACAATGGCTACAAGGT
GTACTGGACCAATGGAGCCCAAATCATTCCGCCGCACGACGAGAGCATAC
AGGATTCCATTCTAAACAATTTGGAGCCCAAAGGCTCATCCTGGGACGAT
TCAGCGATGTGCTCTAACACAATGCTGGAGGATCAGTACGATATCGTTGT
GCCCCCCTATTTCGATATACTGAAGAAACTACTGCCTTGCACTT
UFO05659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 2443 | CG8073-RA | 324..1060 | 8..744 | 3355 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9108534..9109005 | 744..273 | 2135 | 96.8 | Minus |
| 2R | 25286936 | 2R | 9109233..9109395 | 170..8 | 800 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9109071..9109172 | 271..170 | 435 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:15 has no hits.
UFO05659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:34 Download gff for
UFO05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 322..1065 | 1..744 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:10 Download gff for
UFO05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 317..1060 | 1..744 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:37 Download gff for
UFO05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 317..1060 | 1..744 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:37 Download gff for
UFO05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9108534..9109006 | 272..744 | 96 | <- | Minus |
| 2R | 9109071..9109172 | 170..271 | 95 | <- | Minus |
| 2R | 9109234..9109402 | 1..169 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:10 Download gff for
UFO05659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4996039..4996511 | 272..744 | 96 | <- | Minus |
| arm_2R | 4996576..4996677 | 170..271 | 95 | <- | Minus |
| arm_2R | 4996739..4996907 | 1..169 | 97 | | Minus |
