UFO05664.5prime Sequence
1100 bp (982 high quality bases) assembled on 2009-07-15
> UFO05664.5prime
CAGTCGACATGAGTGCGACCAGGGGAAAGGAGGCAAAGAAAAGAAAACCA
ACCCCCACCAGCGACGGCGGAGAACAGGAAAACAACAACAGAAGGCACAC
AACCAGCGCACCACCACCATCATTACCATTACCGCCACCACCCACCACAA
CACTTCGTCATCGTTTCGCGTTGTGCAGAAAAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACG
TTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAA
CATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAAC
ACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGT
ATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTG
TAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGC
CATACGAATTCCGGATGAGCATTCATCAGCGGGCAGATGTGAATAAAGGC
CGGATAACTGTGCTTATTTTTCTTACGGTCTTAAAAGGCCGTATATCAGC
TGACGTCTGTATAGGTACATGAGCACTGACTGAATGCTCAATGTTCTTAC
GATGCATGGGATTATCACGTGTTATCAGTGATTTTTTCTCCATTAGCTTC
TTAGTCTGAGATCTAACTCGTAGCTACTTACCGAGTTAGATCAAATATTG
UFO05664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RL | 2247 | CG6930-RL | 341..514 | 9..182 | 855 | 99.4 | Plus |
| l(3)neo38-RD | 4963 | CG6930-RD | 881..1054 | 9..182 | 855 | 99.4 | Plus |
| l(3)neo38-RC | 2247 | CG6930-RC | 341..514 | 9..182 | 855 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11777839..11778012 | 182..9 | 855 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 21:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..299 | 748..817 | 124 | 67.6 | Plus |
UFO05664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:57 Download gff for
UFO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RB | 726..911 | 1..190 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:30 Download gff for
UFO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RC | 334..519 | 1..190 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:51 Download gff for
UFO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RC | 334..519 | 1..190 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:51 Download gff for
UFO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11777836..11778017 | 1..187 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:30 Download gff for
UFO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7603558..7603739 | 1..187 | 95 | | Minus |
