UFO05665.5prime Sequence
846 bp (37 high quality bases) assembled on 2009-07-15
> UFO05665.5prime
CAATCCACATGTCATCCGGACCGTTTTTTGTGGGCGTGGACGTGGGCACG
GGCAGTGCGAGGGCGGCCCTGGTCGCCTGCGATGGGCGTGTCCTGGAGCA
TGCGGTGCAAACGATCCAAACGTGGAATCCTGAGCCGGGCTACTACAACC
AGTCGTCCGATAATATATGGCAGTCCATCTGCCAGGTGGTGAATAAAGTC
ATTGGCGGCGTCCATAAGTCAAAAGTCAAGGGCATTGGCTTCGATGCCAC
CTGCTCCTTGGTGGTTCTGGGCCCCCAGGGATCGCCGCTGACGGTGAGCA
AGTCCGGTGAGGCGGAGCAGAACATAATCCTCTGGATGGACCATCGTGCC
GAGCAGGAAACCCAAGAGATCAATGCCTTCAAGCACTCGCTGCTGAAATA
TGTGGGTGGTCAGGTTTCCCTGGAAATGGAGGTTCCCAAATTGCTGTGGC
TGAAAAGGAATCTGTCACACACTTTTGGAAATATTTGGAGGGTCTTTGAC
CTGCCCGACTTTCTGACCTGCCGAGCCACTGGAATGAACACCCGATCACT
TTGCTCGGTGGTGTGCAAGTGGAACTACGATGCAGCGAATGGCACTTGGA
ACACTGACTTCCTGAATCACGCGGACTTGTGAGGAGTTGACACATAATAA
CTTCGAGAAATTGGGCAGTGATGTCTAGCCGCCTGACCGAACGGTGGGCA
AGGACTCACGGCCAAGGCTGCTGGGGAACTGGACTTATCCGCCGCGCTGT
GATGAGCACCTCCCTCATCCATGCTCATGCTGGCGCCTTGTGATGTTTGA
ATGCCCCTCAAAGGAGTCCAAAGCTGCAGACGATGTCGAGGTAAAT
UFO05665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 2123 | CG11594-RE | 384..1218 | 9..841 | 3585 | 95.6 | Plus |
| CG11594-RD | 1879 | CG11594-RD | 140..974 | 9..841 | 3585 | 95.6 | Plus |
| CG11594-RC | 1944 | CG11594-RC | 205..1039 | 9..841 | 3585 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4024058..4024706 | 841..195 | 2615 | 94.9 | Minus |
| 3L | 28110227 | 3L | 4024946..4025130 | 193..9 | 880 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:26:54 has no hits.
UFO05665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:59 Download gff for
UFO05665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 203..1042 | 9..845 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:57 Download gff for
UFO05665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 205..1044 | 9..845 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:21 Download gff for
UFO05665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 205..1044 | 9..845 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:21 Download gff for
UFO05665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4024945..4025130 | 9..194 | 97 | | Minus |
| 3L | 4024053..4024706 | 195..845 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:57 Download gff for
UFO05665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4024053..4024706 | 195..845 | 94 | <- | Minus |
| arm_3L | 4024945..4025130 | 9..194 | 97 | | Minus |
