UFO05666.5prime Sequence
1056 bp (914 high quality bases) assembled on 2009-07-15
> UFO05666.5prime
CAGTCGACATGGCAGGCAAACTCCTGACTGTTTTCTCCCTTCTGGCCATC
GCCGCATCCTGTCGCGCAGGATTCGCCGCCACCTATGCCGGCTATCATCC
CGCCTATGCCACCTACCAGGCACCGGCTGCCGTCTACCATGCGGCACCAG
TGGCCCAGGCTGCTGTCTACCAGCAGGCGGCTCCAGTTTACGCCAAGACC
TTTGTGCCAGCTGCTCCTGTATACACCAGATCCTATGCCCTGCCCACTCC
AGTTGTCAAGGCGGTGGCTCCTGCTCCTCTCGCTCTGCCCGTTGCTGCGC
CGGTGGTGAAGACCCTGGCTGCTGCTCCCGTGGTCGCTGCTCCAGTGGTC
AAGACTGTGGCTGCTGCTCCCGCTGTACTGAAACAGGTAGAGTTGGAATC
TTCGCCGCGCTACGACTTCTCCTACGGCGTTCACGACAGCATCACCGGCG
ATATCAAAAGCCAGGTGGAGACCCGTGACGGTGGCAATGTTGTGGGATCC
TATTCCGTCCTGGATGCCGATGGTTTCAAGCGCACAGTGACCTACACCGC
CGACGACATCAACGGATTCAATGCGGTGGTCCAGCGGGAACCGGTTGTCG
CTGCCCGCGCAGTTGCTGCTCCAGTGGTTTCCGTCTCCGCTCCAGCTCCA
GTTCCCGTCCATATTTCCTCCGCTCCCGTTGCCTCGCTGCCCGCTCCCAT
CTACTATCCACACCAGCAGGTGTTCGCCCACAGCAGATTCAACAGGTTGC
CGAGCAGCAGGGTGAGGTGGTGAGTCTCCTGTGACCCAACAGCCCGAGCT
GGAACCCACTCCCATTGACTACACGAGGGTCAGCAGCAGCAGCAGAAGCA
GCAGCAGCAGACCTATCCCCAGGATCAGCAGTTCCCACCCTACCTCGCCA
GCTGGTCAATCCTCCTCAGCTCCTGAACAGCGATGATTCCGAACTGGTGA
AGCACGATCTGCCCCGGAGCACCATACACACACGCTGCTCCAGTTACGAA
GAAAACAAAAAACGGCGCAGCTTCTAGACATTCGTTTGGCGGCGGGCAGG
TAAAGT
UFO05666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr31A-RA | 1229 | CG33302-RA | 144..1106 | 9..969 | 4570 | 98.7 | Plus |
| Cpr64Ab-RA | 552 | CG15007-RA | 275..411 | 494..627 | 195 | 78.4 | Plus |
| Ccp84Ae-RA | 754 | CG1330-RA | 311..398 | 516..603 | 185 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10054862..10055812 | 21..969 | 4360 | 98.6 | Plus |
| 3R | 32079331 | 3R | 6691243..6691330 | 603..516 | 185 | 80.7 | Minus |
| 3L | 28110227 | 3L | 4211055..4211157 | 596..494 | 185 | 78.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..2854 | 370..272 | 135 | 65 | Minus |
UFO05666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:00 Download gff for
UFO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr31A-RA | 133..1160 | 1..1016 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:58 Download gff for
UFO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr31A-RA | 135..1162 | 1..1016 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:14 Download gff for
UFO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr31A-RA | 135..1162 | 1..1016 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:14 Download gff for
UFO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10054862..10055868 | 21..1016 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:58 Download gff for
UFO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10054862..10055868 | 21..1016 | 97 | | Plus |
