UFO05667.5prime Sequence
1015 bp (903 high quality bases) assembled on 2009-07-15
> UFO05667.5prime
CAGTCGACATGCTAAAGCCATCGATTATCTGCCTCTTTTTGGGCATTTTG
GCGAAATCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCGGCCCAGGT
GCCCAACTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGCGCTGTGCA
TCCATCTGGAGGACTGCAAGTACCTATACGGCCTGCTGACCACCACCCCG
CTCCGGGACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGCGGCTATAC
GAACGGCAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGAGAGCTCAT
CGGAGACGACGCCACCGCCCAAGCCCAATGTAACCAGCAACAGCCTTCTG
CCGCTGCCAGGACAATGCGGCAACATCCTGTCCAATCGCATCTATGGCGG
AATGAAGACCAAGATCGACGAGTTCCCCTGGATGGCTCTAATTGAATACA
CCAAAAGCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCTTGATCAGC
ACAAGATATGTGATCACAGCCTCGCATTGTGTCAACGGAAAGGCACTGCC
CACCGACTGGCGGTTGTCCGGTGTTCGTTTGGGCGAATGGGACACCAACA
CTAATCCCGATTGCGAAGTAGATGTGCGCGGCATGAAAGGACTGCGCGCC
ACCGCATCTGGACGTGCCCGTGGAGCGTACTATACCCCATCCCGACTATA
TACCGGCCTCCAAGAACCAGGTCAACGACATAGCCCTGCTGCGTCTGGCC
CAGCAGTGAGTACACCGACTTTGTGCGACCCATTTGCCTGCCTCTGGACG
TCAATCTGCGGTCGGCCACCTTCGACGGCATCACCATGGACGTGGCCGGC
TGGGGCAAACGGAGCAGCTGTCGCCAGCACCTCAGCTGAGCAGCGTGGAG
GATCCGATGATGATGCCAGACGTCTACAGCAGCAGACTTCTCCTCGAGGA
ACACACAGATGTGTGCGGCGCAGAGGCTCGACTCCTGTCCGGTGACTCGG
GACCGCCCATCGCTT
UFO05667.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ea-RA | 1430 | CG4920-RA | 205..1234 | 9..1012 | 4435 | 97 | Plus |
| ea-RB | 1527 | CG4920-RB | 363..1331 | 70..1012 | 4130 | 96.8 | Plus |
| ea-RB | 1527 | CG4920-RB | 205..265 | 9..69 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15329180..15329567 | 70..457 | 1940 | 100 | Plus |
| 3R | 32079331 | 3R | 15329631..15330049 | 457..873 | 1920 | 98.8 | Plus |
| 3R | 32079331 | 3R | 15328933..15328993 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:41:47 has no hits.
UFO05667.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:01 Download gff for
UFO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ea-RA | 196..1233 | 1..1012 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:04 Download gff for
UFO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ea-RA | 197..1234 | 1..1012 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:18 Download gff for
UFO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ea-RA | 197..1234 | 1..1012 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:18 Download gff for
UFO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15328925..15328993 | 1..69 | 94 | -> | Plus |
| 3R | 15329180..15329566 | 70..456 | 100 | -> | Plus |
| 3R | 15329631..15330212 | 457..1012 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:04 Download gff for
UFO05667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11154647..11154715 | 1..69 | 94 | -> | Plus |
| arm_3R | 11154902..11155288 | 70..456 | 100 | -> | Plus |
| arm_3R | 11155353..11155934 | 457..1012 | 94 | | Plus |
