UFO05668.5prime Sequence
1044 bp (912 high quality bases) assembled on 2009-07-15
> UFO05668.5prime
CAGTCGACATGCGGCGCGTTCCGCCCACGGATGCTGAAATGCAACCGAAT
CGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTTCTGCCCTGCAAGAGGA
TGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTACCCGAAGCGGTCGGG
ATCGAAATGTTGAAAACTACGACTTCTCATTGCGATACCGGCTGAACGGC
GAGAACACTCTAAAGCGACGACTCTCAAACTCTTCGGAGGACGGCGGCGA
ATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTTCTAGTCGGCCCATCA
CCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGAACGGGTCACCGGTCA
CGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGATTTCTGCGAGCCCAG
ACACATTCTGGACTTAAACGAAGTGGGTGAGAGAGATCCTTCGGATGTGG
CTACCGAAATGGCCAGCAAACTGTACGAGGAAAAGGACGAATTACTTGTT
CGAGTCGTGGAGGTTCTTGGCATAGATGTGTGCCTAGAGCTATACAAGGA
AACTCAGCGCATTGAAGCCGATGGCGGCATGATGATCAAAAACGGCATAC
GGAGACGTACACCAGGCGGGGTATTCCTGTTCCTAATAAAGCACCACGAT
AACATCACTCAGGAGCAGCAGAAGCGCATTTTTAGTGAGGATCGCCAGAG
TCTGAGCAAGTCTCGAAAGCAGATCGAAACGTTGATGCGGGACCGTATGT
GAAGAGTTGAAGAAGTGCCTCAGCAAGCAGTTACGGAACTGCCGACGTTA
ATCAGCGCAAAGAGTACTACATGCAGGCGACGAGCAAGTGAGATAGCACG
GGCAGCTGTCACCGCCACCTCCCCTGTGCGCTGAGCAGAGCACGACAGCC
TGAGTACAGACCCACGAGATCATATAATCTTGTGGACATGCGACTCCTCC
CATCAAAGCAGCGGGCGGCGGCTCAGGAGCGCCGCCTGAAGATTATCAGC
TACGACCACGACTTCTGACGTCATGCGGACTGAACTTCGAAGCT
UFO05668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phax-RB | 1591 | CG8069-RB | 421..1468 | 9..1023 | 4370 | 96.4 | Plus |
| Phax-RA | 1533 | CG8069-RA | 363..1410 | 9..1023 | 4370 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9114694..9115183 | 9..498 | 2450 | 100 | Plus |
| 2R | 25286936 | 2R | 9115384..9115635 | 591..837 | 1015 | 97.2 | Plus |
| 2R | 25286936 | 2R | 9115238..9115330 | 498..590 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:45 has no hits.
UFO05668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:03 Download gff for
UFO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phax-RB | 415..1474 | 1..1028 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:54 Download gff for
UFO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phax-RA | 358..1417 | 1..1028 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:59 Download gff for
UFO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phax-RA | 358..1417 | 1..1028 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:59 Download gff for
UFO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9114689..9115183 | 1..498 | 99 | -> | Plus |
| 2R | 9115239..9115330 | 499..590 | 100 | -> | Plus |
| 2R | 9115384..9115660 | 591..857 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:54 Download gff for
UFO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5002194..5002688 | 1..498 | 99 | -> | Plus |
| arm_2R | 5002744..5002835 | 499..590 | 100 | -> | Plus |
| arm_2R | 5002889..5003165 | 591..857 | 96 | -> | Plus |
