UFO05669.5prime Sequence
1091 bp (961 high quality bases) assembled on 2009-07-15
> UFO05669.5prime
CAGTCGACATGGCGATGTGGTTTCTAGGTGCTTTGGTGGCCACCGTTGTG
CTCCTAACGGGCAGCGTGCAAGCCACAGATCTACCCTATGAAACACTGAG
GGAGCAAATCATGGAAGCGGAGCGCGTGGCCTCGCTGGGTGGCAACATCT
GGCTGTCGTCCGACGAGGAGAAGGCCAACAGCATCCTGATGAACGCCAAG
CGGGCAGAGATCGCCGAAGGACTCAAGACGCCGGAGAAGTACGCGCCCGC
GATGCACTTCTTCCAGGGCAGGCAGTACGTCCGGCAGAGCGAGGTATTCC
GCATGATCCAGAAGATTCCGAAGGGTGCCTTTCTGCACGGTCACAATACG
GGTATGGTGACTTCACGCTGGATCATACAGAATCTGACCACCACCAATAA
TCTGTACACCTGTCGCAATGTGGATGGACTGCTAGTGTTCACCTACGATC
AGTCCGGATGCCATAGCGAAGTGCAGAATGTGTGCACTGAGAGGATAAAT
GCCGAGGATCGGGGAAAGTACGAGCGCCAGCTGGAGAAGCACATCAATAT
GCACGGACCAAGGCCGGAAGCTCTATTGCCAAATCGTAAGAAGATTTGGG
AGCGCTTTGAGAACATATTTACCACCGTGGATCGGCTGTATAAATACCGA
CCCACCTATTGTGCCTATCACAAGCGAATGTTGGAGGAACTTTGCGAGGA
TAACATTATCTATGCCGAGATACGAGCCTCCCTCTCGCCGCTGTACGACG
ACAACAATCGAACTCTGAGCACCTTGGAGGTGGCCAACGAGCTGGAACGG
ATTGTGGAGGAATTCAAGGCCAAGCACCATGACTTCATCGGTGTTAAGGT
GATATATGCCAAGCGGATCGCGCATCCGAGGAGGAGATGTTGCGCCGAAT
CACCACTTTTAAGCAGCTGCACCATGCCAAACCGAACTTTGTGATTGCTT
CGATCTGATTGGTCAGGAGACACTGGAGAACGCTGACAGTATTATCACCA
ACTGTCGATCTTCTAGCCGCCAACTACTTCTTCCAGCGGCGAGACGATGA
TGCCGAACGCACTGACCTGATGACGCATTCTGCTGAATCGA
UFO05669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adgf-D-RA | 1613 | CG9621-RA | 76..1176 | 9..1088 | 4905 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13704333..13704818 | 570..85 | 2430 | 100 | Minus |
| 3R | 32079331 | 3R | 13703872..13704054 | 921..740 | 865 | 99.5 | Minus |
| 3R | 32079331 | 3R | 13704110..13704281 | 740..569 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 13705252..13705327 | 84..9 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 13703702..13703763 | 981..922 | 195 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:13:28 has no hits.
UFO05669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:04 Download gff for
UFO05669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adgf-D-RA | 132..1184 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:44 Download gff for
UFO05669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adgf-D-RA | 76..1128 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:45 Download gff for
UFO05669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adgf-D-RA | 76..1128 | 9..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:45 Download gff for
UFO05669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13703872..13704053 | 741..921 | 99 | <- | Minus |
| 3R | 13704110..13704279 | 571..740 | 100 | <- | Minus |
| 3R | 13704333..13704818 | 85..570 | 100 | <- | Minus |
| 3R | 13705252..13705327 | 9..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:44 Download gff for
UFO05669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9529594..9529775 | 741..921 | 99 | <- | Minus |
| arm_3R | 9529832..9530001 | 571..740 | 100 | <- | Minus |
| arm_3R | 9530055..9530540 | 85..570 | 100 | <- | Minus |
| arm_3R | 9530974..9531049 | 9..84 | 100 | | Minus |
