Clone UFO05670 Report

Search the DGRC for UFO05670

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:56
Well:70
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG17562-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05670.5prime Sequence

1079 bp (965 high quality bases) assembled on 2009-07-15

> UFO05670.5prime
CAGTCGACATGGATACGGATATTCAAAGATGCTTCCGGAGCAAAACGGTG
TTCCTAACTGGAGCCACCGGCTTTTTGGGTAAAGTCGTTATTGAGAAACT
TTTGCGGACCACAGAGGTGAAACGCATCTATGTGCTAATTAGACCAAAGC
GCGGAGTTGAGATTAAGGATCGGATTATCACCTGGTCAAAAGATGCGGTA
TTTGAACTGCTGCTGAAGTCCAAGCCGGAGGCACTTCAAAGAGTATGTCC
CATCGCTGGGGATTGCCTCGACTTTGATTTGGGAATCAGCGAGAATGATC
GAAGACTTCTGGCCTCCGAGGTGCAGATTGTCATCCATGGAGCTGCCACC
GTGCGATTCAATGAGCCGCTTCACGTGGCCCTGGCCATCAACACAAGGGC
CACCAAGCTGATGATTCAACTGGCCAAGGAAATGAGGCAGCTGGAGGCCT
TCGTTCATGTATCGACCGCCTTCTCCAACTGCGTTATCTACAACATCAAG
GAAAATTTCTACCCCGAGCATCTCAACTGCAGTTCCGATAAGGTGCTTGC
AATGGCAGAGCTGATGAGTGACGAGCTACTGGACAACATGGAGCAAGCGC
TCCTTGGCTCGTTTCCCAACACGTACACGTACACCAAAGCACTGGCGGAG
GATGTGATCCTGAAGGAAGCGGGTGGCTTGCCACTTTGCATCTTCCGACC
GGCAGTCATTATTGCGGCCCACAAGGAACCCATCTCCGGCTGGATAGACA
ACATGTACGGACCAATGGCAATTCTTTTCGGGGTGGCCCGTGAGTACTGC
GCATTGCCACCATCGATCACCATGCCGAGGCAAGCCTGGTGCCCGTGATT
ATTGTGCCAATTTGACTCTGGCCTGTACCTGAAGACCATTGTGAAGGTAA
CGAGATGGGAACACAAGAAACTCCTCCTCATCTACCAACTGCGCCCATGA
GCAGAACAAGATCACCCACGGGAGTTCATTCGACATGCTCCTCGATGGAC
GCACCACTGCCGCTGACAAAGAATGATATGGTATCCCTTCATCATGCATC
CATGGCGTGTCTTTCCCTGAGCTTCTCTA

UFO05670.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-RA 1674 CG17562-RA 101..1141 9..1043 4920 98.9 Plus
CG17560-RA 1712 CG17560-RA 32..726 9..703 745 74.4 Plus
CG14893-RB 1688 CG14893-RB 123..839 47..763 435 71.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16615653..16616164 197..708 2560 100 Plus
3R 32079331 3R 16616222..16616562 709..1043 1120 96.5 Plus
3R 32079331 3R 16615409..16615600 9..200 960 100 Plus
3R 32079331 3R 16618320..16618782 241..703 575 74.9 Plus
3R 32079331 3R 16621289..16621626 318..655 400 74.6 Plus
3R 32079331 3R 12392072..12392238 484..318 250 76.6 Minus
Blast to na_te.dros performed on 2014-11-28 20:02:24 has no hits.

UFO05670.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:51 Download gff for UFO05670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 99..1159 9..1059 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:47 Download gff for UFO05670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..1161 9..1059 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:07 Download gff for UFO05670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..1161 9..1059 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:07 Download gff for UFO05670.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16615409..16615597 9..197 100 -> Plus
3R 16615654..16616164 198..708 100 -> Plus
3R 16616222..16616564 709..1044 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:47 Download gff for UFO05670.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12441131..12441319 9..197 100 -> Plus
arm_3R 12441376..12441886 198..708 100 -> Plus
arm_3R 12441944..12442286 709..1044 96 -> Plus