UFO05671.5prime Sequence
1072 bp (968 high quality bases) assembled on 2009-07-15
> UFO05671.5prime
CAGTCGACATGCATCTGAGAGGGGATGTTTTGTTAGGGGGTGTGGCGGCG
GACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCCCGACAGGC
GACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAAATCCACGG
TGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGAACGAACTG
GAGCGCAACATCACAATCAAGCTGGGTTATGCCAACGCCAAAATCTACAA
GTGTGACAACCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATCGGATGCAT
CCAGCAAGGACGACAGCTTGCCCTGCACTCGGCTCAACTGCTCCGGCAAC
TTCAGACTGGTGCGACATGTGAGCTTCGTGGATTGCCCCGGTCACGACAT
TCTTATGGCTACCATGTTGAACGGTGCTGCTGTGATGGACGCTGCTCTGC
TGCTCATTGCTGGCAATGAATCCTGTCCACAACCGCAAACCTCTGAGCAT
TTGGCCGCCATTGAGATTATGAAGCTGAAACAGATTCTGATCTTGCAAAA
CAAGATCGATCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTACGAGGAGA
TCACCAAATTCGTCCAGGGCACCGTAGCTGAGGGCGCTCCGATCATTCCG
ATCTCGGCCCAGCTTAAGTACAACATCGATGTGCTCTGCGAGTACATTGT
GAACAAGATACCAGTGCCGCCGCGTGACTTCAATGCCCCGCCCCGTCTGA
TCGTCATCCGATCCTTCGACGTGAACAAGCCAGGCTGTGAGGTGGCAGAC
CTTAAGGCGGTGTGGCCGGTGGCTCCATTCTGAGCGGCGTGCTGAAGTAG
GCCAAGAGATCGAGGTGCGTCCGGGCGTTGTGACCAAGGATAGCGATGGC
AACATCACCTGCGTCCAATCTTTCTCCCGTATCGTCTCGCTCTTCGCCGA
ACAGAATGAGCTGCAGTACGCCGTTGCCCCGCCGGTCTGATTTGGTGTGG
GCACCAAGATCGATCCTACGCTGTGCCGTGGCGATCGTTTGGTCGGTCAA
GTGTCTAGGGCCGTTGCAACTG
UFO05671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2gamma-RC | 1886 | CG43665-RC | 98..1156 | 7..1066 | 5050 | 98.9 | Plus |
| eIF-2gamma-RD | 2062 | CG43665-RD | 177..1192 | 50..1066 | 4835 | 98.8 | Plus |
| eIF-2gamma-RB | 1922 | CG43665-RB | 177..1192 | 50..1066 | 4835 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15258794..15259388 | 1053..458 | 2605 | 98 | Minus |
| 3R | 32079331 | 3R | 15259449..15259687 | 463..225 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 15262545..15262722 | 227..50 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 15262796..15262840 | 51..7 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:31 has no hits.
UFO05671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:53 Download gff for
UFO05671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-9-RC | 95..1156 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:52 Download gff for
UFO05671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RC | 95..1156 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:10 Download gff for
UFO05671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RC | 95..1156 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:10 Download gff for
UFO05671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15258781..15259383 | 463..1066 | 98 | <- | Minus |
| 3R | 15259450..15259686 | 226..462 | 100 | <- | Minus |
| 3R | 15262547..15262721 | 51..225 | 100 | <- | Minus |
| 3R | 15262797..15262843 | 1..50 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:52 Download gff for
UFO05671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11084503..11085105 | 463..1066 | 98 | <- | Minus |
| arm_3R | 11085172..11085408 | 226..462 | 100 | <- | Minus |
| arm_3R | 11088269..11088443 | 51..225 | 100 | <- | Minus |
| arm_3R | 11088519..11088565 | 1..50 | 94 | | Minus |
