UFO05672.5prime Sequence
1042 bp (941 high quality bases) assembled on 2009-07-15
> UFO05672.5prime
CAGTCGACATGCAGCGGGCGCGCTCTACACTGACACAAAAGCTTCGGTTT
TGCCTTAGTCGGGACCTGAACACCAAAGTTGGCAACCCGGTTAACTTCGA
GACTGGAAAGCTTAGCGGAGCTTTAACTCGCATCGCCGCCAAAAAACAAC
CATCACCAACGCCATTCTTACCGGCGATCAGACGATATTCGGACTCCAAG
CAGAGCACTTTGAAGAATATGGCCGATCAGAAACTGCTGCAAACCCCGCT
GGCACAGGGCGATCCGGAGCTGGCCGAGCTGATCAAGAAGGAGAAGGAGC
GCCAGCGCGAAGGACTCGAGATGATCGCCAGTGAGAACTTCACCTCGGTG
GCGGTTCTCGAGAGCCTGAGCTCCTGCCTGACCAACAAGTACTCCGAGGG
ATATCCCGGCAAGAGGTACTACGGTGGCAACGAGTACATCGACCGCATAG
AGCTGCTCGCCCAGCAACGCGGACGCGAGCTGTTCAACCTGGACGATGAG
AAGTGGGGCGTTAATGTGCAGCCTTATTCCGGATCCCCGGCCAATCTGGC
TGTCTACACGGGCGTCTGCCGGCCCCACGATCGCATCATGGGCCTGGATC
TGCCCGATGGCGGTCACTTGACGCACGGTTTCTTCACGCCCACCAAGAAG
ATATCGGCCACATCGATCTTCTTCGAGAGCATGCCGTACAAAGTGAACCC
GGAGACGGGCATCATCGATTACGATAAGTTGGCGGAGGCGGCGAAGATTT
CCGGCCGCAGATCATCATTGCTGGCATATCGTGCTACTCCCGTCTGCTGA
CTATGCGCGTTTCCGACAGATTTGCGATGATGTGGCGCCTACCTGATGGC
CGACATGCCCATGTGGCGGGCATTGTGCCGCGGGATTGATACATCGCCGT
TCGATGGGCGACATTGTGACCACCACCACGCACAAGACACTGCGAGGTCC
GCGCCGCCCGGCGGTGATCTTCCTTCCGCAGGCGTGGCGCAGCACCAGCA
TGGAGACAGTATCTACGATCTTGGAGGAGCGCATCACCAGCG
UFO05672.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RA | 2001 | CG3011-RA | 255..1296 | 6..1036 | 4705 | 97.8 | Plus |
| CG3011-RC | 1592 | CG3011-RC | 1..887 | 161..1036 | 3930 | 97.4 | Plus |
| CG3011-RB | 2054 | CG3011-RB | 516..1349 | 214..1036 | 3665 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5913857..5914405 | 954..414 | 2350 | 98.2 | Minus |
| X | 23542271 | X | 5916263..5916472 | 215..6 | 1050 | 100 | Minus |
| X | 23542271 | X | 5914579..5914782 | 417..214 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:27 has no hits.
UFO05672.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:27:55 Download gff for
UFO05672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 247..1298 | 1..1042 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:52 Download gff for
UFO05672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 251..1302 | 1..1042 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:08 Download gff for
UFO05672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 251..1302 | 1..1042 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:08 Download gff for
UFO05672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5913764..5914403 | 416..1042 | 96 | <- | Minus |
| X | 5914581..5914780 | 216..415 | 100 | <- | Minus |
| X | 5916263..5916476 | 1..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:52 Download gff for
UFO05672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5807797..5808436 | 416..1042 | 96 | <- | Minus |
| arm_X | 5808614..5808813 | 216..415 | 100 | <- | Minus |
| arm_X | 5810296..5810509 | 1..215 | 98 | | Minus |
