UFO05676.5prime Sequence
1051 bp (920 high quality bases) assembled on 2009-07-15
> UFO05676.5prime
CAGTCGACATGGGTCAAAAACTATCGTGTTGCCAAAAGTGCGGCGATTGG
AAGTGGTGTACATCTAAGGACAACGAGGAGTCAACGCTGCGTATACGCAA
TGCCAATGCCAACTATTTTACGGGCATTCCACAAGGCGACAAAACAGATG
GCGCCAGCTCAGCAGTATTGGGCGTTTTGAAGGTCGATCTGTGCCTGGAG
GACAACCATGAGGAGCACCATACGAGTCACTTCTATGCGGCAGCTGCCAA
GGAAGCGTTGGTCGTGCGACGAGGAGAACCCTTCCGGCTGAAGATCCACT
TCAATCGAGACTACAGTCCCAGCAAGGACGCCATCAGTTTCATTTTCACA
GTAGCGGATGACACCAAGCCGAGTCCCGGTCATGGAACACTCAATGCCCT
GGTGCCGCACGATGGCATCGATTATCTGGGCGACACTTTGGAATGGGGAG
CCGGCATCGAATCGCATGAGGGTCAAACGCTTACGGTGCTAATCAAGCCA
CCATCCACCTGTCCCGTAACGGAATGGAAACTGGACATCGACACGAAGCT
GCTGGGCGATGGATCGCGAAGCTATCCCCTGCCGTTGCCCATCTATGTAC
TCTTTAATCCCTGGTGTCCGGATGATCAGGTGTATCTGGAGGATCGTGAT
CAGCGCAAGGAGTACGTGATGCACGATACCACGCTCATCTGGAGGGGATC
GTACAACAGATTGCGTCCATCGGTTTGGAAAATCGGGCAATTCGAACGAC
ATGTGCTCGAGTGCAGCCTAAAGGTATTGGGTACGGTGGGCAGGATTCCG
CCAGCCTACAGAGGCGATCCCGTGAGAGTTGCTCGCGCCTTGTCCGCACT
GGTGATTCGGTGGATGATGACGGTGTTTTGCTGGGCAACTGGTCAGAGGA
CTTCTCGGCGGCGTGGCACCCACCAAGTGGACTGGTCGTGAGATCTCAGC
ATCTACAGACCAGAGTCGGTGAGTTGCACAGTGCTGATTTCAGCGTGTTC
TGACACATGCAGGAGTCTGGGAATACGTCTAGAATCACACTTGCTATCTC
T
UFO05676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tg-RA | 2797 | CG7356-RA | 338..1401 | 6..1046 | 4735 | 97.7 | Plus |
| Tg-RB | 2601 | CG7356-RB | 331..1254 | 146..1046 | 4035 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8024512..8025306 | 143..935 | 3860 | 99.6 | Plus |
| 2L | 23513712 | 2L | 8011742..8011883 | 6..147 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:53 has no hits.
UFO05676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:11 Download gff for
UFO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7356-RA | 331..1402 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:31 Download gff for
UFO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 333..1404 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:39 Download gff for
UFO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 333..1404 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:39 Download gff for
UFO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8011737..8011883 | 1..147 | 97 | -> | Plus |
| 2L | 8024517..8025441 | 148..1051 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:31 Download gff for
UFO05676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8011737..8011883 | 1..147 | 97 | -> | Plus |
| arm_2L | 8024517..8025441 | 148..1051 | 97 | | Plus |
