UFO05678.5prime Sequence
1030 bp (928 high quality bases) assembled on 2009-07-15
> UFO05678.5prime
CAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCAAGGCCTCC
CAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCGGAGTTCAA
CGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGGACGGTATC
AAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCAGCGGTGCT
ATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGATCACTGGTG
CACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGAGTGGCGGG
ACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGACGTTCAGC
AACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGACTGGTCAGC
TTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAACGGCTGGA
GTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACCACAACTGG
GTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTGGGTCGTGT
GACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGACTCCTACG
GTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCCTGGGACGT
CTTGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTTATCATGTCC
GGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCCTCAAATTAT
CGGCATGGAAATCTCGCGGGAGGAGGACCGGAGTCGAATTGCCTTCTTCA
GAGCTGCGGCTGGTCATCGGCACACCCTAATGCCTCTGCTGTACTGTGGC
TACGCACTGGGACTCTCATGTGCTCACTCGATACCCACAGCGATGGTCTG
CTTTTTCAAATACGTCATCGATCGCTCGATGATGATAGCAACAGCGCTTC
GCGAGCATTGTCCACTGCGAGAAGCCAAATACGTCATCGCTCGACATGAC
GAAAGAATGGCGAAATTACAGTCGACAGCA
UFO05678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7084-RE | 2809 | CG7084-RE | 846..1867 | 9..1000 | 4385 | 97 | Plus |
| CG7084-RF | 3810 | CG7084-RF | 1258..2279 | 9..1000 | 4385 | 97 | Plus |
| CG7084-RC | 2460 | CG7084-RC | 497..1518 | 9..1000 | 4385 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22300339..22300646 | 9..316 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 22301464..22301641 | 596..772 | 840 | 99.4 | Plus |
| 3R | 32079331 | 3R | 22301228..22301392 | 431..595 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 22300704..22300819 | 317..432 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 22301705..22301839 | 772..897 | 260 | 93.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:46 has no hits.
UFO05678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:21 Download gff for
UFO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7084-RA | 348..1304 | 1..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:59 Download gff for
UFO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7084-RB | 474..1430 | 1..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:17 Download gff for
UFO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7084-RC | 490..1446 | 1..941 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:17 Download gff for
UFO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22301705..22301862 | 772..917 | 91 | == | Plus |
| 3R | 22301464..22301640 | 596..771 | 99 | -> | Plus |
| 3R | 22300704..22300819 | 317..432 | 100 | -> | Plus |
| 3R | 22301230..22301392 | 433..595 | 100 | -> | Plus |
| 3R | 22300332..22300646 | 1..316 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:59 Download gff for
UFO05678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18127186..18127362 | 596..771 | 99 | -> | Plus |
| arm_3R | 18126426..18126541 | 317..432 | 100 | -> | Plus |
| arm_3R | 18126952..18127114 | 433..595 | 100 | -> | Plus |
| arm_3R | 18126054..18126368 | 1..316 | 98 | -> | Plus |
| arm_3R | 18127427..18127584 | 772..917 | 91 | == | Plus |
