UFO05679.5prime Sequence
1043 bp (895 high quality bases) assembled on 2009-07-15
> UFO05679.5prime
CAGTCGACATGGAGGAACGCGCTGTGCTCGCTAACATTGCGTCCATAATC
ACCAAGGACTTGCTGATTGATCAGCCGTCCGTGGACATCAATTCAGGCAT
TTATCCGCTGTTGACCTTCGACGAGGACGACGATGAGGCAGAGATTTTCG
CTTTGATGCAGCGAAAACGGGCGTTGGCTTCCGGCCGGAAGCGCAGGAAC
TCCCAAGAACCGGAGGACCGGAAACAGGACCTAAAGATGCCCAAGCTGGA
GTGGCACCACCCGGAACTCAACCTACTGCACCGCTACACGGATGCCCAGT
TCGAGTCCTACCTTCACATGCGCAAGCTAACATTCCTGAAAATCCAGCAA
GCCCTAGAGAAAACTTTATGTGGAATCGCGTTGCCAGGCTATCCCAGTCC
GCCGGCGCAGACCATGGTGTCCTTGGCCCTGTGGAAGCTGTCCACCGACG
AGCACTTCGAGGAGATCGCCCGCAAGTTTCGACTGCCCTGGGCTCTCTGC
CAGCAGGTGGTGCGGGCATTCTGGCACTGCATCTCCGATAATTACGAGAG
CTTTATTAAGTGGCCAAACTCACTGGCGGCCCAGCGGAGCACCCTGCAGG
GATATCAGAGACTGGACAAACTGCGCTGCTTTCGGGAACTGTTTGGCATA
ATAACGCTGAGGCGACTGGACGTATTTCTGGAGTCGGAGCACGCCGATGT
GCCTGTGGTGCTCCAGTTAATATGCAATGCCGAGCGAAAGATCGTCGACT
GCTACGTTGAGCTGGCCATGGAGTACAGCTTCGAGGACTCACCCATTGGC
CAGACATTGGCCCTGAATCCGAGGACCATGCCGGCGGGCAGCTATCTCAT
CGGAACGATGTGTTTCTCTCAATCCTACCTGATGCGGCCCATTGAGCCGA
TGCTTCCGCAGGATGCATGTTCACGAAATGCTGCGTCCGCTTCGAGCTGC
GAACAGTACTGACCTTGCACGACGTTTCATACCCTGTACGCTTTGAGCCG
AATTGGACGAGGTGGCTCATGGGAGAGCATCTGTGGCAATGCA
UFO05679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32187-RA | 1326 | CG32187-RA | 72..1126 | 8..1035 | 4610 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17805279..17805840 | 896..338 | 2660 | 99.5 | Minus |
| 3L | 28110227 | 3L | 17805964..17806294 | 338..8 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:21 has no hits.
UFO05679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:23 Download gff for
UFO05679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 65..1132 | 1..1042 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:14 Download gff for
UFO05679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 65..1132 | 1..1042 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:56 Download gff for
UFO05679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 65..1132 | 1..1042 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:56 Download gff for
UFO05679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17805110..17805839 | 339..1042 | 95 | <- | Minus |
| 3L | 17805964..17806301 | 1..338 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:14 Download gff for
UFO05679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17798210..17798939 | 339..1042 | 95 | <- | Minus |
| arm_3L | 17799064..17799401 | 1..338 | 99 | | Minus |
