UFO05680.5prime Sequence
894 bp (709 high quality bases) assembled on 2009-07-15
> UFO05680.5prime
CAGTCGACATGATGTGCAAGGCTCTCCTGATCGCCGTTTTGGCGATTGCC
CACTGCCAGGCGGTACTGGAAACGGACGCCAACACCTTGGTTCTGCTGGA
CAACCTGGCCATCCGGGAAACCCACTCGATCTTCTTCAAATCGCTGCAGG
ATCGCGGATTTAAGCTCACCTACAAACTGGCGGATGACTCCAGCCTGCTG
CTGTCCAAATACGGTGAATATCTGTACAAGAACGTCATCATATTCGCACC
AAGTGTCGAGGAATTCGGCGGCGATGTGAGCGTGGAGCGTTTGGCCCAGT
TCGTCGACGATGGCGGCAATGTTCTGGTGGCGGGCAGCGAGAAATCCGGC
GACGCGCTAAGGGAATTCGCCTCCGAGTGCGGCTTCGAGCTGGACGAGGA
GAATGCGGCGGTCATTGACCATCTGCACTACGATGTTAGCGATGCTGGCG
AGCACACAACCATCCTGACCTCCGCCAAGAATCTTATACAGGCCGACACC
ATTGTGGGCAAGGCCAACAGGCAGGCGGATGCCGCACCGCTGCTCTATCG
CGGTACAGGACTGATTGCCGACAGGAGAACCCGCTGGTACTCAAGCTGCT
GACCGCCGAGAGCACCGCCTATAGCTACAATCCCGAGGCAAGTGTCTCCG
ACTATCCGCATGCCGTTGGCCGAGGCACGCTGCTAATCGCACGCCCTGCA
GCGAAGAACAATGCCCGCGTATGTTCCTCCGGCTCGCTGCTCATCTTCTT
CTGACGAGAGCTTCACAACGCCGTGCAGTTACGCACAAAGCGGTGTGTTC
CACAGCTGGCCTGTAACCCCGAAAGTGACCGATCATTACCAGTGGGTAAT
TGGAAAAACTGCGCTGCCCGTGCATCCTGCCACTACCCACGGAG
UFO05680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ost48-RA | 1513 | CG9022-RA | 85..940 | 9..861 | 3785 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9157562..9158216 | 804..150 | 2885 | 98 | Minus |
| X | 23542271 | X | 9158290..9158431 | 150..9 | 695 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:00:02 has no hits.
UFO05680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:24 Download gff for
UFO05680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 81..895 | 9..822 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:40 Download gff for
UFO05680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 85..899 | 9..822 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:32 Download gff for
UFO05680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 85..899 | 9..822 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:32 Download gff for
UFO05680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9157562..9158215 | 151..804 | 98 | <- | Minus |
| X | 9158290..9158431 | 9..150 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:40 Download gff for
UFO05680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9051595..9052248 | 151..804 | 98 | <- | Minus |
| arm_X | 9052323..9052464 | 9..150 | 99 | | Minus |
