UFO05682.5prime Sequence
1036 bp (944 high quality bases) assembled on 2009-07-15
> UFO05682.5prime
CAGTCGACATGTCCTCGAAAGTGATAACCTCGTTAATGGCCGAGAGCATA
CTGCTCTCAAAAGTGGGCCAAGTGATATCCGGCTACTCGCCGATCACGGT
TTTTCTCCTTGGATCCATTCTAATTTTCCTCGTAGTCTACAACAAGCGCC
GATCCCGACTGGTGAAGTACATCGAAAAGATCCCGGGACCTGCGGCCATG
CCCTTCCTGGGCAACGCCATCGAAATGAATGTGGATCACGACGAGCTCTT
TAACCGCGTCATCGGCATGCAAAAGTTGTGGGGCACGCGTATCGGAATCA
ATCGCGTTTGGCAGGGAACAGCTCCAAGGGTGCTCCTCTTCGAGCCTGAG
ACCGTGGAGCCCATACTGAACAGCCAGAAGTTTGTGAACAAGAGCCACGA
CTACGACTATCTGCATCCTTGGTTGGGAGAGGGTCTGCTTACCAGCACAG
ATCGCAAGTGGCACTCCCGCAGGAAGATCCTCACACCTGCCTTCCACTTC
AAAATCTTGGACGATTTCATCGACGTTTTCAATGAGCAGAGCGCAGTCTT
GGCCAGAAAATTGGCGGTGGAGGTGGGCAGCGAGGCGTTCAACCTGTTCC
CCTACGTCACGCTCTGCACCTTGGACATTGTTTGTGAAACCGCCATGGGT
CGCAGAATTTACGCCCAGAGCAATAGTGAATCGGAGTATGTGAAGGCGGT
CTATGGCATTGGATCGATTGTACAGAGTCGGCAGGCGAAGATTTGGCTGC
AGAGCGACTTCATTTTCAGCCTGACCGCGGAGTACAAGCTCCACCAGAGC
TACATAAACACCCTGCATGGATTTTCCACATGTGATCCGCGAGCGAAAGG
CTGAGTTGGCCATTCTCAGGAGACATACACATATATACGCCCCCGATGCT
ATGATGACGTGGGAAGAAGAGCGCTGCTCTGACTCTCATCGATGCTCTAG
AGACTGTTCTTTCTATGAGACTTCGCGAGGAGTGACCTTATGTCGAGGGC
CCGCTACCTCTGCGCCATCCTGACATTTGCTGCTGC
UFO05682.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4c3-RA | 1906 | CG1438-RA | 134..1058 | 9..920 | 4300 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30894171..30894405 | 9..243 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 30897861..30898022 | 475..636 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 30899495..30899658 | 706..867 | 720 | 98.8 | Plus |
| 3R | 32079331 | 3R | 30897678..30897796 | 358..476 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 30897502..30897618 | 243..359 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 30898111..30898181 | 636..706 | 355 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1490..1528 | 495..533 | 114 | 76.9 | Plus |
UFO05682.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:05 Download gff for
UFO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4c3-RA | 203..1215 | 1..982 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:38 Download gff for
UFO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4c3-RA | 126..1138 | 1..982 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:56 Download gff for
UFO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4c3-RA | 126..1138 | 1..982 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:56 Download gff for
UFO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30897503..30897618 | 244..359 | 100 | -> | Plus |
| 3R | 30897680..30897796 | 360..476 | 100 | -> | Plus |
| 3R | 30897863..30898022 | 477..636 | 100 | -> | Plus |
| 3R | 30898112..30898181 | 637..706 | 100 | -> | Plus |
| 3R | 30894163..30894405 | 1..243 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:38 Download gff for
UFO05682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26719885..26720127 | 1..243 | 98 | -> | Plus |
| arm_3R | 26723225..26723340 | 244..359 | 100 | -> | Plus |
| arm_3R | 26723402..26723518 | 360..476 | 100 | -> | Plus |
| arm_3R | 26723585..26723744 | 477..636 | 100 | -> | Plus |
| arm_3R | 26723834..26723903 | 637..706 | 100 | -> | Plus |
