UFO05683.5prime Sequence
1078 bp (936 high quality bases) assembled on 2009-07-15
> UFO05683.5prime
CAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGTCCTTCTCC
GTGCCCGTCGAGGAGCCCAAGGCCATTTGTACCTTCTCCCAGGTCTTGGC
TGCTCTGAGTGTCTCGCTGGGCTCCCTAGTGGTCGGATTTGTCAGCGCTT
ACACGTCGCCTGCTCTTGTGTCGATGACCGATCGGAATATCACCTCGTTT
GAGGTCACCCAAGATGCTGGTTCTTGGGTTGGTGGCATCATGCCGCTGGC
TGGATTGGCAGGTGGCATAGCCGGAGGACCCTTGATCGAATATCTGGGCA
GGCGCAACACCATCCTGGCCACTGCGGTGCCCTTCATTGTCTCATCACTA
CTGATTGCCTGTGCTGTGAATGTGGCTATGGTTCTGTGCGGACGATTCCT
GGCTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGTCTACCTGG
GTGAAACTGTGCAGCCTGAGGTGCGAGGCACTTTGGGTTTGCTGCCCACG
GCCTTTGGTAACATAGGCATCCTGCTCTGCTTCGTGGCGGGATCCTTTAT
GAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGTTCCCTTCC
TGATTTTAATGTTCCTTATTCCGGAAACTCCGCGCTGGTTTGTGGGCCGT
GGTCTGGAGGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGTGGCAAGGA
GGCTGATGTGGAGCCCGAACTGAAGGGTTTGATGCGATCCCAGGCCGATG
CCGATCGTCAGGCATCGCGAAACACCATGTTGGGAGCTGCTTAAGCTCAA
CAATCTGAAGCCACTATCAATTTCCTTGGGTCTGATGTTCTTCCAACAGT
TCAGCGGTATCACGCGGTATCTCTACACGGTCCAGATCTCAGGATGCGGG
ATCCACCATGATGGCATCTCTGCACGATCATGGTGGGATGTACTTTTGGC
TACGTTTATAGGCATCGTTCTGATGATCGGGCGGGCAGAAAGATTCTTCT
ATATGTCTCCGAACTCCCATGGTTCTGACCCTTGTTCGTTCTGGGCGCTT
CTCTCACTGCAGAAGGTAACGTCGGAGT
UFO05683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-1-RB | 1980 | CG30035-RB | 160..1216 | 9..1052 | 4845 | 98.1 | Plus |
| Tret1-1-RA | 3132 | CG30035-RA | 1393..2368 | 90..1052 | 4440 | 98 | Plus |
| Tret1-2-RA | 1695 | CG8234-RA | 113..1169 | 9..1052 | 3470 | 89.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11673045..11673830 | 219..992 | 3320 | 97.5 | Plus |
| 2R | 25286936 | 2R | 11676526..11677217 | 219..906 | 2350 | 90.6 | Plus |
| 2R | 25286936 | 2R | 11672713..11672843 | 89..219 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 11676208..11676338 | 89..219 | 505 | 92.4 | Plus |
| 2R | 25286936 | 2R | 11672215..11672300 | 9..94 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 11676047..11676132 | 9..94 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:45 has no hits.
UFO05683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:06 Download gff for
UFO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30035-RB | 248..1320 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:01 Download gff for
UFO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RB | 153..1225 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:17 Download gff for
UFO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RB | 153..1225 | 1..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:17 Download gff for
UFO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11672208..11672298 | 1..92 | 95 | -> | Plus |
| 2R | 11672717..11672842 | 93..218 | 100 | -> | Plus |
| 2R | 11673045..11673830 | 219..992 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:01 Download gff for
UFO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7560222..7560347 | 93..218 | 100 | -> | Plus |
| arm_2R | 7559713..7559803 | 1..92 | 95 | -> | Plus |
| arm_2R | 7560550..7561335 | 219..992 | 98 | -> | Plus |
