UFO05685.5prime Sequence
973 bp (868 high quality bases) assembled on 2009-07-15
> UFO05685.5prime
CAGTCGACATGCCTGCTATTGGAATCGATCTGGGCACCACCTACTCCTGC
GTGGGTGTCTACCAGCATGGCAAGGTTGAGATTATCGCCAATGACCAGGG
CAACCGCACCACGCCGTCCTACGTGGCTTTCACAGACTCGGAACGCCTCA
TTGGTGATCCGGCCAAGAACCAGGTGGCCATGAACCCCAGAAACACAGTG
TTTGACGCCAAGCGACTCATCGGCCGAAAATACGACGATCCCAAAATCGC
AGAGGACATGAAGCACTGGCCTTTCAAAGTTGTAAGCGACGGCGGAAAGC
CCAAGATCGGGGTGGAGTATAAGGGTGAGTCCAAGAGATTTGCTCCCGAG
GAGATCAGTTCGATGGTGCTGACCAAGATGAAGGAGACGGCGGAGGCGTA
TCTGGGCGAGAGCATCACGGATGCAGTCATCACAGTTCCAGCTTACTTCA
ACGACTCTCAGCGCCAGGCTACCAAAGACGCCGGTCACATCGCCGGCCTG
AATGTGCTCCGCATCATCAATGAGCCCACGGCGGCAGCATTGGCCTACGG
ACTGGACAAGAACCTCAAGGGTGAGCGCAATGTGCTTATCTTCGACTTGG
GCGGCGGCACCTTCGATGTCTCCATCCTGACCATCGACGAGGGATCTCTG
TTCGAGGTGCGCTCCACAGCCGGAGACACACACTTGGGCGGCGAGGACTT
TGACAACCGGCTAGTCACCCACCTGGCGGAGGAGTTCAAGCGCAAGTACA
AGAAGGATCTGCGCTCCAACCCTCGCCGCCCTACGACGCCTCAGACAGCA
GCTGAACGGGCCAAGCGCACACTTCTCTCTAGCACGGAGCCACCATCGAG
ATCGACGCATTGTTTGAGGCCAGACTTCTACACCAAAGTAGCGTGCAGTT
TGAGGAGCTGGGGCGCGGACTCTCGCACACCTGCAGCTGTGGAGAGCCTC
ACGATGCAGATGACAGTCCGATC
UFO05685.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp70Bc-RA | 2386 | CG6489-RA | 243..1191 | 9..945 | 4305 | 98 | Plus |
| Hsp70Bb-RA | 2347 | CG31359-RA | 243..1191 | 9..945 | 4305 | 98 | Plus |
| Hsp70Ba-RA | 2324 | CG31449-RA | 220..1168 | 9..945 | 4290 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12506035..12506919 | 9..890 | 4155 | 99 | Plus |
| 3R | 32079331 | 3R | 12509318..12510202 | 9..890 | 4155 | 99 | Plus |
| 3R | 32079331 | 3R | 12466673..12467557 | 890..9 | 4140 | 98.9 | Minus |
| 3R | 32079331 | 3R | 12502752..12503636 | 9..890 | 4125 | 98.8 | Plus |
| 3R | 32079331 | 3R | 11955406..11956289 | 889..9 | 3730 | 95.8 | Minus |
| 3R | 32079331 | 3R | 11958789..11959672 | 9..889 | 3730 | 95.8 | Plus |
| 3R | 32079331 | 3R | 24056337..24057104 | 776..9 | 1665 | 81.1 | Minus |
| 3R | 32079331 | 3R | 15244372..15245118 | 12..761 | 1240 | 78 | Plus |
| 3R | 32079331 | 3R | 13045581..13046163 | 170..752 | 920 | 77.2 | Plus |
| 3L | 28110227 | 3L | 13975966..13976470 | 254..761 | 465 | 73.2 | Plus |
| 3L | 28110227 | 3L | 13974590..13974767 | 19..196 | 440 | 83.1 | Plus |
| X | 23542271 | X | 11803871..11804160 | 637..345 | 440 | 77.5 | Minus |
| 3R | 32079331 | 3R | 13044979..13045131 | 24..176 | 360 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:26 has no hits.
UFO05685.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:32 Download gff for
UFO05685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Bc-RA | 235..1163 | 1..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:38 Download gff for
UFO05685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Bb-RA | 235..1163 | 1..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:46 Download gff for
UFO05685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Bb-RA | 235..1163 | 1..924 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:46 Download gff for
UFO05685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12506027..12506955 | 1..924 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:38 Download gff for
UFO05685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8331749..8332677 | 1..924 | 98 | | Plus |
