UFO05686.5prime Sequence
968 bp (839 high quality bases) assembled on 2009-07-15
> UFO05686.5prime
CAGTCGACATGGGTGAATTGCCGCCAAATTCAGTCGGCGTCTTTTTGGCG
CTGCTCCTCTGCAGCTGCTCTTTAATAGAACTGACCCGTGCGCAGTCCCC
CATCCTGGAGATTTATCCCAAACAAGAAGTCCAGCGCAAGCCAGTGGGCA
AGCCCCTGATCCTCACCTGCCGGCCCACAGTTCCCGAGCCGTCCCTGGTC
GCCGATCTGCAATGGAAGGACAATCGGAACAACACCATTCTGCCCAAGCC
GAATGGACGCAACCAGCCGCCGATGTACACGGAAACGCTGCCCGGCGAAA
GTTTGGCCCTGATGATTACCTCGCTGTCGGTGGAAATGGGCGGCAAGTAC
TACTGCACCGCCTCCTATGCAAATACGGAGATCCTCGAGAAGGGCGTCAC
AATTAAAACTTACGTGGCCATCACCTGGACAAATGCCCCTGAGAATCAGT
ACCCCACTCTTGGCCAAGACTATGTGGTAATGTGCGAGGTAAAGGCCGAT
CCCAATCCAACAATCGACTGGCTGCGCAACGGAGATCCGATCCGCACGAC
CAACGACAAGTATGTGGTGCAAACCAATGGCCTGCTAATCCGAAATGTCC
AGGAGAGCGATGAAGGCATCTACACTTGCCGTGCAGCCGTTATCGAAACT
GGTGAGCTATTGGAACGCACCATTCGCGTGGAGGTCTTCATTCAGCCGGA
GATCATATCGCTACCCACCAATCTGGAGGCCGTCGAGGGCAAGCCGTTTG
CAGCCAACTGCACAGCAAGAGCAAACCAGTACCGGAGATTAGTTGGATTC
GAGATGCCCCACACTGAACGTGGCGACCGCGATCGCTTCCAAGTGAATCC
CCAAGCTGGCTGGTACCATCAGCTCCGTTAGCCAGATGATTATGCACATA
CACATGCTGCCAAGAATAGGCGGTGTATGATCAGAAAACAAGCTGAATGT
TTGTGCCTCGCGATCTAT
UFO05686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas2-RH | 3260 | CG3665-RH | 421..1378 | 9..952 | 4415 | 98.2 | Plus |
| Fas2-RG | 3475 | CG3665-RG | 421..1378 | 9..952 | 4415 | 98.2 | Plus |
| Fas2-RD | 3352 | CG3665-RD | 421..1378 | 9..952 | 4415 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4143154..4143544 | 920..539 | 1515 | 96.7 | Minus |
| X | 23542271 | X | 4154584..4154758 | 251..77 | 875 | 100 | Minus |
| X | 23542271 | X | 4149388..4149551 | 414..251 | 820 | 100 | Minus |
| X | 23542271 | X | 4143627..4143752 | 539..414 | 630 | 100 | Minus |
| X | 23542271 | X | 4203191..4203260 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:36 has no hits.
UFO05686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:33 Download gff for
UFO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RC | 418..1395 | 9..968 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:25 Download gff for
UFO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RE | 421..1398 | 9..968 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:06 Download gff for
UFO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RD | 421..1398 | 9..968 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:06 Download gff for
UFO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4143097..4143543 | 540..968 | 95 | <- | Minus |
| X | 4143627..4143751 | 415..539 | 100 | <- | Minus |
| X | 4149388..4149551 | 251..414 | 100 | <- | Minus |
| X | 4154585..4154756 | 79..250 | 100 | <- | Minus |
| X | 4203191..4203260 | 9..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:25 Download gff for
UFO05686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4037130..4037576 | 540..968 | 95 | <- | Minus |
| arm_X | 4037660..4037784 | 415..539 | 100 | <- | Minus |
| arm_X | 4043421..4043584 | 251..414 | 100 | <- | Minus |
| arm_X | 4048618..4048789 | 79..250 | 100 | <- | Minus |
| arm_X | 4097224..4097293 | 9..78 | 100 | | Minus |
