UFO05688.5prime Sequence
1067 bp (920 high quality bases) assembled on 2009-07-15
> UFO05688.5prime
CAGTCGACATGTACGAGAAAACATTAAACATAGGAACTGCGAAAGTTAAT
AATGCATATGAATGGCAAAAAGTGAGATACAACAACAAACCCCAACCGAC
AACAACAGCAGCAGCTGCAGTTAAACCTAAACCACAACAACAACAAGTTC
AAAAACAGAAAAATGCAACAAAAGCCGCGCCAGCAACAACTACAGCTGCA
ACAACAACAGCAACAGTGCCACCGTTAGCCGGCAACAGCGTTACCGTTAA
GCAAGGCCCCAAAATCAAATTTGTTGGCAACGCGGCGCGCCGCCAATCGT
TGGCCCATCAAATCAAGCGAGCACATCGGCATTTACTGACCAGTGGCGGT
CAGGATAAGCAGCCGCAGCAAAAGCAAAAAACACAAGTGCAGCCGCAGTC
GGGCAAAACAGTTGCCAAACCGAAACAGAGGCAGCAGAAACAATTGTTCA
AAAGTGATAAGGCGAAGGAGAAGTCCAGCAGGCAGCAGAGAAAGCGAGCC
GGCACCAGGAGCACTCGCAATCCGAGGACGCAATCGGAATCTTCGGGCCT
GTCATCCCGTTGGTGTTCCATCGAAGAGCAGTTGAACCTGCTGGACGACC
TGCTCTACTACTGCGATGAGGAGGCCGAACTGTATCTAGCCCAGCTGTAC
GAAAGGTTCGAGACACTCCGGCGTAGCAGGAGTTCCTCGCCAGTGAGCGA
TTTCTGGAGCGATTCCGACATGGAGCACGATGACTCCAGCACCAGTGGCA
CTGGCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCTCGCTGAGC
GTCGTGACCACCAGCATCATCCGCGATTCTCGGGCACTCGCCGTCCCAAT
GTGCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGCGACTCAAGA
GCGCCTGTCAATCTGAAAGGAAAGACGCAACGGAGGAGAGCACACAGCAG
CAGAACGGAGGAGGTGCTGCCACCAGCAAAGCACTTTAAGCCTGCCCCTC
AGTGATCGGTGAACAATCTGGGCAGCAACAGTCCCAGGCCAAGACGAAAG
CACGTGCAAGATAGAGG
UFO05688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RH | 3054 | CG4898-RH | 278..1348 | 9..1062 | 4840 | 97.8 | Plus |
| Tm1-RC | 2651 | CG4898-RC | 242..945 | 376..1062 | 3005 | 96.6 | Plus |
| Tm1-RI | 2501 | CG4898-RI | 92..795 | 376..1062 | 3005 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15288253..15288931 | 376..1040 | 2640 | 96.3 | Plus |
| 3R | 32079331 | 3R | 15287455..15287821 | 9..375 | 1835 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 156..195 | 398..359 | 119 | 77.5 | Minus |
UFO05688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:34 Download gff for
UFO05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..1352 | 9..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:16 Download gff for
UFO05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..1352 | 9..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:31 Download gff for
UFO05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..1352 | 9..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:31 Download gff for
UFO05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15287455..15287821 | 9..375 | 100 | -> | Plus |
| 3R | 15288253..15288960 | 376..1067 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:16 Download gff for
UFO05688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11113177..11113543 | 9..375 | 100 | -> | Plus |
| arm_3R | 11113975..11114682 | 376..1067 | 96 | | Plus |
