UFO05690.5prime Sequence
1118 bp (1013 high quality bases) assembled on 2009-07-15
> UFO05690.5prime
CAGTCGACATGGGCAACACCCAAGCCCGACAACTGGAGAACCGCCAAGTG
CCGAATCGGAGGAGCAGCATTTTGTGGAACTTTCGGTACTCGAACACAGT
GCGTCGTCGCGAAGATTTGGCCGTAATGGTGCACAACTCTAGGATGAGCA
TAAGCGAGTGGCTGGACCTTCTGGAGCTGCAGCAGTACGAAGGAAACCTA
CAGGAGTTCAGCACCGTGGACGATGTGGTGGACATCACGGACAAGGAGCT
GAAGCAATTTGGCGTGCGCGGTGCCCATCGCCAGAGGATGGTCAATAGTT
TGCTGGGTGTTCGTGCCAAGCGAAGGCAGTCCATGAATCTGGAAGCAATG
AGCAGTGCGCCGCGAGCAGTGCCACGGCGCAAGAAATCGTGTCCATTGGT
GTATCTGGGTGAGAATCCCCAAGATATGGCGGGAAGCGGCGATAGCGGAC
CCGGCGTGATTACCACCAAGAGTGGCAAGGTCCTGAAGCAACTAACCTTT
GATGAGACCTCCACCATCTACGAGGAACTAAGGCCGCGCTCCAAGTGCAA
CAGTCCCCATTGGGCCATCGAAGACAGCAGGATGGAGGGCTATGGGAGCA
GCAATGCCACCACTCCGCTGGCCACCGCCCAGCCCAGTCCCAGCGAGCAA
CAGGAGGCCATCGCCCTGAAGAAGGCGCTCGAGTGGGAGCTGAGTTTGGA
CGCCAGGGAGCTGCGTTCGCACGCCTGGTACCACGGCGCACTGCCACGCC
AGCGGGCCGAGGAGATCGTGCAGCGCGAGGGCGACTTCCTGGTCCGCGAC
TGCGCCTCCCAGCCGGACACTATGTGCTCAGCTGCCGGAGCAAAGCGGCT
GTACTGCACTTCGTACTTAATAAGTTGGTGCTTCAACCGGAGACGGTTTA
CGACGTGTGCAGTACCAGTTCGAGGAGGATGCCTTTGATACGGTGCCCGA
CCTATTACCTTCTACGTGGGATCCGGCAGCCCATCTCGTCAGCATCGGGA
GCGCCTCATCAGTTTCCCTGCAATCGCACCTATCCGCCTCTCCTTTCTAC
GCCACAAGAATCGTGGCCAACCACCTGCCACACCGCGAATGCTGCCGTCC
TGCCAGGCTGAATCTCTG
UFO05690.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RA | 3481 | CG9098-RA | 101..1174 | 7..1078 | 4930 | 97.8 | Plus |
| CG9098-RC | 3470 | CG9098-RC | 101..1163 | 7..1078 | 4755 | 96.8 | Plus |
| CG9098-RB | 2998 | CG9098-RB | 270..832 | 518..1078 | 2465 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6010309..6010670 | 878..518 | 1685 | 98.3 | Minus |
| 2L | 23513712 | 2L | 6011555..6011728 | 517..344 | 810 | 97.7 | Minus |
| 2L | 23513712 | 2L | 6011783..6011937 | 345..191 | 745 | 98.7 | Minus |
| 2L | 23513712 | 2L | 6011985..6012111 | 193..67 | 635 | 100 | Minus |
| 2L | 23513712 | 2L | 6010075..6010242 | 1037..873 | 600 | 94.6 | Minus |
| 2L | 23513712 | 2L | 6012178..6012238 | 67..7 | 305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2858..2889 | 691..722 | 115 | 84.4 | Plus |
UFO05690.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:37 Download gff for
UFO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 94..1188 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:27 Download gff for
UFO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 94..1188 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:10 Download gff for
UFO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 94..1188 | 1..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:10 Download gff for
UFO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6010052..6010240 | 875..1060 | 93 | <- | Minus |
| 2L | 6010313..6010670 | 518..874 | 98 | <- | Minus |
| 2L | 6011555..6011726 | 346..517 | 97 | <- | Minus |
| 2L | 6011783..6011935 | 193..345 | 98 | <- | Minus |
| 2L | 6011986..6012111 | 67..192 | 100 | <- | Minus |
| 2L | 6012179..6012240 | 1..66 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:27 Download gff for
UFO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6010052..6010240 | 875..1060 | 93 | <- | Minus |
| arm_2L | 6010313..6010670 | 518..874 | 98 | <- | Minus |
| arm_2L | 6011555..6011726 | 346..517 | 97 | <- | Minus |
| arm_2L | 6011783..6011935 | 193..345 | 98 | <- | Minus |
| arm_2L | 6011986..6012111 | 67..192 | 100 | <- | Minus |
| arm_2L | 6012179..6012240 | 1..66 | 93 | | Minus |
