UFO05691.5prime Sequence
1089 bp (960 high quality bases) assembled on 2009-07-15
> UFO05691.5prime
CAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCTTGTCGCCG
ATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGCAGCAGTCA
GCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTACAACTCCG
CAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACGTGGAGGAG
ATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACCTCCTGGGA
CGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTTGGCGCCCG
TGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAGGAGCCGTC
GCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTGGCCGTCCA
GGCCATCATCAGGAGCTACCAGATTCGAGGACATAATATTGCTCACCTCG
ATCCACTTGAAATTAATACACCAGAATTGCCTGGCAACTCCTCGACGAAA
TCCATTTACGCTAATTTCAGTTTTGGCGAGCAGGACATGGATCGCCAGTT
CAAGCTGCCCAGCACTACCTTCATCGGAGGCGATGAGGCTTCGTTGCCCC
TAAAGGAAATCCTGAACCGCCTGGAGAATGTCTACTGTAATAAGATTGGC
GTGGAGTTCATGTTCATCAACTCTCTGGAGCAATGCAACTGGATCCGCAA
GCGTTTTGAGACCCCCGGCGTCCTTAACTTCTCGCCCGAGGAGAAGCGTC
TGATCCTGGCCCGTTTGACCCGTGCCACCGGCTTTGAGGCTTTCCTGGCC
AAGAAGTACTCTTCTGAGAACGTTTCGGTCTGGAGGGTTGCGAGATCATG
ATCCCAGCCCTGAAGGAGATCATCGACGTATCAACGGAGTTGGGAGTGAG
TCGGTCATCATGGGCATGCCCCATCGTGACGTCTTACACCTTGTCATGTA
TGCCGCAGCCCTGACAGATCTCACCCAGTCGCTGACTGAGCTGCTGATGA
TGCTCTGTGATGTCAGTACATCTCGTACATACATCGAGGCGATGACCGCG
TACAACAGAACTCGCTGCCTGTCTGGGCAACGTCAATCT
UFO05691.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RJ | 4376 | CG11661-RJ | 460..1509 | 9..1038 | 4755 | 98 | Plus |
| Nc73EF-RI | 4028 | CG11661-RI | 112..1161 | 9..1038 | 4755 | 98 | Plus |
| Nc73EF-RA | 4381 | CG11661-RA | 112..1161 | 9..1038 | 4755 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16962476..16962801 | 605..928 | 1530 | 99.4 | Plus |
| 3L | 28110227 | 3L | 16959705..16959884 | 243..422 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 16959281..16959422 | 101..242 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 16961498..16961603 | 421..526 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 16959121..16959216 | 9..104 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 16962334..16962414 | 525..605 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:17:19 has no hits.
UFO05691.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:38 Download gff for
UFO05691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RB | 73..1141 | 9..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:40 Download gff for
UFO05691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RA | 109..1177 | 9..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:57 Download gff for
UFO05691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RA | 112..1180 | 9..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:57 Download gff for
UFO05691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16962476..16962887 | 605..1001 | 96 | -> | Plus |
| 3L | 16959121..16959216 | 9..104 | 100 | -> | Plus |
| 3L | 16959285..16959422 | 105..242 | 100 | -> | Plus |
| 3L | 16959705..16959884 | 243..422 | 100 | -> | Plus |
| 3L | 16961500..16961602 | 423..525 | 100 | -> | Plus |
| 3L | 16962335..16962413 | 526..604 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:40 Download gff for
UFO05691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16955435..16955513 | 526..604 | 100 | -> | Plus |
| arm_3L | 16954600..16954702 | 423..525 | 100 | -> | Plus |
| arm_3L | 16952221..16952316 | 9..104 | 100 | -> | Plus |
| arm_3L | 16952385..16952522 | 105..242 | 100 | -> | Plus |
| arm_3L | 16952805..16952984 | 243..422 | 100 | -> | Plus |
| arm_3L | 16955576..16955987 | 605..1001 | 96 | -> | Plus |
