UFO05692.5prime Sequence
1040 bp (924 high quality bases) assembled on 2009-07-15
> UFO05692.5prime
CAGTCGACATGAATGAAACAGAGTGCGAGGATCTCATCAAATCTGTGAAA
TGGACGGAACCAGCCAATCTGATCTCCCTGGCCGTACTCGAGTTCATCAA
CGTTCTGGTCATCGGTGGCAACTGCCTCGTGATTGCCGCCGTCTTCTGTT
CGAATAAGTTGAGGAGTGTGACGAACTTCTTTATTGTCAACCTAGCTGTG
GCCGATCTTCTGGTGGGTTTGGCCGTCCTACCCTTCTCAGCCACCTGGGA
AGTCTTCAAGGTTTGGATATTCGGCGATCTCTGGTGCCGCATTTGGCTGG
CTGTCGATGTCTGGATGTGCACGGCATCGATCCTGAATCTGTGTGCCATA
TCACTGGACCGCTATGTGGCGGTCACACGACCCGTCACCTACCCAAGCAT
AATGTCCACGAAGAAGGCCAAGTCCTTAATCGCCGGCATTTGGGTACTCT
CATTTTTTATTTGCTTTCCGCCGCTAGTCGGCTGGAAGGATCAAAAGGCG
GTTATACAGCCGACCTATCCAAAGGGAAACCATACGCTTTACTACACCAC
CACGATGTCAAGCTCGGAGGATGGTCAACTAGGGTTAGATAGCATTAAGG
ACCAGGGCGAGGCATCCTTGCCTCCATCCCCGCCCCATATCGGCAACGGC
AACGCCTACAATCCCTACGATCCCGGTTTCGCACCCATCGATGGATCCGC
GGAGATTCGGATTGCGGCCATTGACTCGACCAGTACTTCAACAACCGCAA
CCACCACGACGACAGCGTCCAGCTCGAGCACCACGGAAACGGAAATGGAC
CTCGATCTACTGAACGCACCGCCGCAGACAGACCCCAAACATTTCGGCAG
TTGTCCGTGAGTGCGAGCTGACCACGATCGGGGTATGTCCTGTACTCCGC
CCTGGCTCATTCTATATACCCATGTCGTGATGCTCTCTCTACTGCGCATC
TACGGGCTGCGTGGAGAACGACGAAAGCATCACAGGCTCAGAACCACCAG
GTCAGTCATCGTTCTCGCTCGAGAAGCACCGCTCCATGGC
UFO05692.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oamb-RF | 4098 | CG3856-RF | 996..1979 | 8..978 | 4545 | 98.4 | Plus |
| Oamb-RE | 3443 | CG3856-RE | 996..1979 | 8..978 | 4545 | 98.4 | Plus |
| Oamb-RG | 4098 | CG3856-RG | 996..1979 | 8..978 | 4545 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20698410..20698859 | 936..496 | 1855 | 97.8 | Minus |
| 3R | 32079331 | 3R | 20700592..20700846 | 262..8 | 1275 | 100 | Minus |
| 3R | 32079331 | 3R | 20700094..20700333 | 498..259 | 1200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:33 has no hits.
UFO05692.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:39 Download gff for
UFO05692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RC | 525..1522 | 1..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:42 Download gff for
UFO05692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RD | 951..1948 | 1..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:49 Download gff for
UFO05692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RG | 987..1984 | 1..982 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:49 Download gff for
UFO05692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20698359..20698857 | 498..982 | 96 | <- | Minus |
| 3R | 20700095..20700331 | 261..497 | 100 | <- | Minus |
| 3R | 20700594..20700849 | 1..260 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:42 Download gff for
UFO05692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16524081..16524579 | 498..982 | 96 | <- | Minus |
| arm_3R | 16525817..16526053 | 261..497 | 100 | <- | Minus |
| arm_3R | 16526316..16526571 | 1..260 | 98 | | Minus |
