UFO05694.5prime Sequence
1090 bp (978 high quality bases) assembled on 2009-07-15
> UFO05694.5prime
CAGTCGACATGGCAACTTTTCAAATGGAAATGCGCCAGCAGCAGCATCAA
CGAACGAATTTAAGGCAACGAGCGGCGGCAGTGGCAACATCCAAAGCCAG
GCGACAACGACAACATCATCTGCAGCCGGAGTCCACTGACTCACCGCCAT
ACAGCACGGATTGCATAAGACTGTGGCCAGGATGTGGCCCAACCACCGCT
GACAGGGTCAACGGCAACCCACCCACCTGCAACAACACCAGCAGCAGCGA
CATAGGCGGCAACATCAGCGGCAACACGAGCAACCGCATCAGCTGTTGCA
GCTGCAACTTCGGACGGCAAAGAGCGCTGATTATGCTCAGCATGCTCGTC
GTTGTCATGGCTCTGATGTCCGGCAATGGAGTTTATGCCGCTCAGCGCGA
CTCCTACAACTCAAAGGATATGAGTAGCAGTAACAATGCCCTGCCCAACG
AAGGAGTGGGAGGATCGGCAGCTGGAGCGGGCGAGGCGGCTGCTCCCGGT
CCCACTGGTATCGACGGAAGCGGAAGCGGCAACAATAGCAGCGGAAATAA
CAAAAACGGCCATCCCGCTGCCGGATCAGGCGCTGCCTCCGAATCCGCTG
CGCTGACTACCGATGCCAGTCGCAGCTCCGTTGGCGGCGCAACCACCATC
ACGGGAATCCCGAGCAGCAGCCTACACAAGGCCAGCAGCGCCAGCAGCAA
CACATTCTCCTCCCAGCTTGCATCCGGCTTCCATCGCAACAGCATCGATC
TGGAGGAGGCCCGCAATGCGGGTCCCTATTTCGACAAGGCCTTCTCCAAG
AACGTCACCGCCCTGCTGGGCAAGACGGCCTATTTGAACTGCCGAGTCAA
GATCTGGGCAATAAGACGATGTTGCTTCAGTGTCGTGGTGCGACATCGGA
CATACATTTGCTGACAGTTGGCCGATACACATAACACGTCGGATCAGCGC
TTTCGGGCCATTCATCAGCCGCAAACTGAGACTGATGCTGCAAATCAGTA
CCCGCCACCATCGAGATCGCATCTACGAGTGCAGTATCGACCTCACCCCC
ACATGAATCCCACTCACTGGAGTGTTCGTTGACCTCCACG
UFO05694.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr9-RB | 4826 | CG33485-RB | 764..1820 | 9..1056 | 4890 | 98.3 | Plus |
| dpr9-RA | 3272 | CG33485-RA | 764..1820 | 9..1056 | 4890 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15066596..15067085 | 868..380 | 2400 | 99.8 | Minus |
| 3R | 32079331 | 3R | 15071452..15071824 | 381..9 | 1865 | 100 | Minus |
| 3R | 32079331 | 3R | 15063230..15063343 | 979..868 | 375 | 96.5 | Minus |
Blast to na_te.dros performed 2014-11-28 22:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3378 | 12..118 | 164 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1587 | 209..269 | 134 | 68.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8939..8982 | 224..267 | 130 | 77.3 | Plus |
| BS | 5142 | BS BS 5142bp | 2045..2121 | 215..291 | 124 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2368 | 639..702 | 119 | 67.2 | Plus |
UFO05694.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:27 Download gff for
UFO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr9-RA | 763..1819 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:15 Download gff for
UFO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr9-RA | 763..1819 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:34 Download gff for
UFO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr9-RA | 764..1820 | 9..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:34 Download gff for
UFO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15063147..15063342 | 869..1056 | 91 | <- | Minus |
| 3R | 15066596..15067083 | 382..868 | 99 | <- | Minus |
| 3R | 15071452..15071824 | 9..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:15 Download gff for
UFO05694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10888869..10889064 | 869..1056 | 91 | <- | Minus |
| arm_3R | 10892318..10892805 | 382..868 | 99 | <- | Minus |
| arm_3R | 10897174..10897546 | 9..381 | 100 | | Minus |
