Clone UFO05696 Report

Search the DGRC for UFO05696

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:56
Well:96
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG4673-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05696.5prime Sequence

394 bp (281 high quality bases) assembled on 2009-07-15

> UFO05696.5prime
CAGTCGACATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAG
AAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATG
TAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCG
AGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCGTTCAGAAT
GCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAAACTTCCTCC
CAGAGCTGCAGGGCAAGTGGCTCCCAGCTGGGTGGGGGACTTTCCTTTGA
AGGCATGGCCGACATGGTCTACTTTAAAACCCAAATGGGTTGGAACTTCA
CCCCCGCCCCCACTAAGCACCAATTGTTCCGGGACAAGTCAGGG

UFO05696.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
Npl4-RA 2362 CG4673-RA 167..478 9..328 1370 96.9 Plus
Npl4-RD 2168 CG4673-RD 75..284 111..328 860 95.4 Plus
Npl4-RB 2208 CG4673-RB 75..284 111..328 860 95.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25623237..25623406 281..110 745 98.3 Minus
3R 32079331 3R 25623478..25623579 110..9 510 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:03:49 has no hits.

UFO05696.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:30 Download gff for UFO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 153..477 1..338 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:42 Download gff for UFO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 161..485 1..338 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:37 Download gff for UFO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 161..485 1..338 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:37 Download gff for UFO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25623478..25623585 1..110 96   Minus
3R 25623189..25623405 111..338 94 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:42 Download gff for UFO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21449200..21449307 1..110 96   Minus
arm_3R 21448911..21449127 111..338 94 <- Minus